miRNA display CGI


Results 41 - 60 of 230 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5395 3' -54.3 NC_001798.1 + 23809 0.66 0.942764
Target:  5'- gGCccGGGGC-CGGCcccccgcCCCCGggGCGc -3'
miRNA:   3'- gUGuuUUCCGuGCCGc------GGGGCuuUGC- -5'
5395 3' -54.3 NC_001798.1 + 23846 0.68 0.897587
Target:  5'- gUACGGcGGGCugGGCgacagccGCCCCGGccucuggggGGCGc -3'
miRNA:   3'- -GUGUUuUCCGugCCG-------CGGGGCU---------UUGC- -5'
5395 3' -54.3 NC_001798.1 + 23895 0.7 0.813255
Target:  5'- gCGgAGGAGGCGCGG-GCCCgguuCGAGGCc -3'
miRNA:   3'- -GUgUUUUCCGUGCCgCGGG----GCUUUGc -5'
5395 3' -54.3 NC_001798.1 + 24034 0.67 0.927887
Target:  5'- -cCAGAAcccGCGCguGGCGCCCgGGGACGu -3'
miRNA:   3'- guGUUUUc--CGUG--CCGCGGGgCUUUGC- -5'
5395 3' -54.3 NC_001798.1 + 24298 0.7 0.795337
Target:  5'- gCGCGAGAa-CGCGGCGCUgaCCGggGCGc -3'
miRNA:   3'- -GUGUUUUccGUGCCGCGG--GGCuuUGC- -5'
5395 3' -54.3 NC_001798.1 + 24465 0.69 0.838857
Target:  5'- cCGCGGGGGuGCuCGcCGCCCUGggGCGc -3'
miRNA:   3'- -GUGUUUUC-CGuGCcGCGGGGCuuUGC- -5'
5395 3' -54.3 NC_001798.1 + 24566 0.67 0.938047
Target:  5'- gGCGGc-GGC-CGGCGCgCgGAGGCGg -3'
miRNA:   3'- gUGUUuuCCGuGCCGCGgGgCUUUGC- -5'
5395 3' -54.3 NC_001798.1 + 24643 0.68 0.880482
Target:  5'- gGCGGAGGGCuucgacggcgaccugGCGGcCGUgCCGggGCu -3'
miRNA:   3'- gUGUUUUCCG---------------UGCC-GCGgGGCuuUGc -5'
5395 3' -54.3 NC_001798.1 + 24723 0.73 0.636635
Target:  5'- cCGC---GGGCGCGGcCGCCCCGccGCa -3'
miRNA:   3'- -GUGuuuUCCGUGCC-GCGGGGCuuUGc -5'
5395 3' -54.3 NC_001798.1 + 25048 0.71 0.758737
Target:  5'- cCGCGGGAGGCGCGcaagcgcaagagcccCGCCCCGGccagGGCGc -3'
miRNA:   3'- -GUGUUUUCCGUGCc--------------GCGGGGCU----UUGC- -5'
5395 3' -54.3 NC_001798.1 + 25255 0.66 0.95148
Target:  5'- cCGCAGGGcGGC-UGGCGCCgccagccgCCGggGCc -3'
miRNA:   3'- -GUGUUUU-CCGuGCCGCGG--------GGCuuUGc -5'
5395 3' -54.3 NC_001798.1 + 25709 0.67 0.916171
Target:  5'- cCugGGcGGGCAacuggacCGGCGCCCCc-GACGu -3'
miRNA:   3'- -GugUUuUCCGU-------GCCGCGGGGcuUUGC- -5'
5395 3' -54.3 NC_001798.1 + 26289 0.68 0.891595
Target:  5'- gCGCGcuGGGGcCugGGCGCgCCGcuGCGg -3'
miRNA:   3'- -GUGUu-UUCC-GugCCGCGgGGCuuUGC- -5'
5395 3' -54.3 NC_001798.1 + 26339 0.66 0.95926
Target:  5'- gCGCGAcgccGuGCGCGGCGgCCCG--GCGg -3'
miRNA:   3'- -GUGUUuu--C-CGUGCCGCgGGGCuuUGC- -5'
5395 3' -54.3 NC_001798.1 + 26557 0.67 0.916753
Target:  5'- cCGCG--GGGCugGccaCGCCgCCGAGGCGc -3'
miRNA:   3'- -GUGUuuUCCGugCc--GCGG-GGCUUUGC- -5'
5395 3' -54.3 NC_001798.1 + 27040 0.67 0.938047
Target:  5'- gGCGGgcGGCACGucucccGCGCCCgCGggGgGu -3'
miRNA:   3'- gUGUUuuCCGUGC------CGCGGG-GCuuUgC- -5'
5395 3' -54.3 NC_001798.1 + 27138 0.68 0.89824
Target:  5'- gAgGGAAGGCACGGgGCgCgGGAGgGa -3'
miRNA:   3'- gUgUUUUCCGUGCCgCGgGgCUUUgC- -5'
5395 3' -54.3 NC_001798.1 + 27192 0.7 0.795337
Target:  5'- gCGCGgggGGAGGgGCGGgGgaagcCCCCGggGCGg -3'
miRNA:   3'- -GUGU---UUUCCgUGCCgC-----GGGGCuuUGC- -5'
5395 3' -54.3 NC_001798.1 + 27549 0.76 0.485427
Target:  5'- gCGCGgggGGAGGgGCGGCGCCCgCGGgggAGCGg -3'
miRNA:   3'- -GUGU---UUUCCgUGCCGCGGG-GCU---UUGC- -5'
5395 3' -54.3 NC_001798.1 + 28656 0.7 0.786148
Target:  5'- cCGCGAccGGUucCGGCGCCgcguggcggcggCCGAGGCGg -3'
miRNA:   3'- -GUGUUuuCCGu-GCCGCGG------------GGCUUUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.