miRNA display CGI


Results 61 - 80 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5395 3' -54.3 NC_001798.1 + 28858 0.69 0.838857
Target:  5'- gGCGAGGgcggccucGGC-CGGCggaGCCCCGGAGCu -3'
miRNA:   3'- gUGUUUU--------CCGuGCCG---CGGGGCUUUGc -5'
5395 3' -54.3 NC_001798.1 + 28950 0.66 0.95148
Target:  5'- cCGCGA-GGGCcCGGCgccGCCCCGccGCu -3'
miRNA:   3'- -GUGUUuUCCGuGCCG---CGGGGCuuUGc -5'
5395 3' -54.3 NC_001798.1 + 29494 0.66 0.947241
Target:  5'- -----cGGGgACGGggcCGCCCCGAGAgGg -3'
miRNA:   3'- guguuuUCCgUGCC---GCGGGGCUUUgC- -5'
5395 3' -54.3 NC_001798.1 + 29600 0.67 0.910822
Target:  5'- gGCGccGGGUAUaaGGCaGCCCCGuguGACGg -3'
miRNA:   3'- gUGUuuUCCGUG--CCG-CGGGGCu--UUGC- -5'
5395 3' -54.3 NC_001798.1 + 31230 0.74 0.564704
Target:  5'- aGCAGcAGcaGCgGCGGCGCCCCGuuGCGg -3'
miRNA:   3'- gUGUUuUC--CG-UGCCGCGGGGCuuUGC- -5'
5395 3' -54.3 NC_001798.1 + 31341 0.66 0.95148
Target:  5'- gGCGGGGGGCGCgcgcaGGCGCggCGGGugGg -3'
miRNA:   3'- gUGUUUUCCGUG-----CCGCGggGCUUugC- -5'
5395 3' -54.3 NC_001798.1 + 31388 0.73 0.626307
Target:  5'- gGCGGAGGGCA-GGaCGCCCCccgcGAGACa -3'
miRNA:   3'- gUGUUUUCCGUgCC-GCGGGG----CUUUGc -5'
5395 3' -54.3 NC_001798.1 + 31560 0.69 0.838857
Target:  5'- cCACAGucgucGGGGCGCGccgcGCGCCCCcgcGCGg -3'
miRNA:   3'- -GUGUU-----UUCCGUGC----CGCGGGGcuuUGC- -5'
5395 3' -54.3 NC_001798.1 + 31752 0.66 0.942764
Target:  5'- gCACAGAgucugggccGGGCA-GGCGCgaCCGAcGCGc -3'
miRNA:   3'- -GUGUUU---------UCCGUgCCGCGg-GGCUuUGC- -5'
5395 3' -54.3 NC_001798.1 + 31867 0.75 0.534455
Target:  5'- cCGCGGAGGGgGCGGCGgcccgcCCCCGGAAg- -3'
miRNA:   3'- -GUGUUUUCCgUGCCGC------GGGGCUUUgc -5'
5395 3' -54.3 NC_001798.1 + 32358 0.7 0.813255
Target:  5'- aCGCGGAGGGCGgccccgagccCGGgGCCCgCGAcccGGCGc -3'
miRNA:   3'- -GUGUUUUCCGU----------GCCgCGGG-GCU---UUGC- -5'
5395 3' -54.3 NC_001798.1 + 32965 0.66 0.95926
Target:  5'- gGgGGGGGGgACGGacacgGCCCCGAAcaGCa -3'
miRNA:   3'- gUgUUUUCCgUGCCg----CGGGGCUU--UGc -5'
5395 3' -54.3 NC_001798.1 + 34490 0.66 0.95926
Target:  5'- uGCGAGAacGCGCGGCGUUCgaGggGCGc -3'
miRNA:   3'- gUGUUUUc-CGUGCCGCGGGg-CuuUGC- -5'
5395 3' -54.3 NC_001798.1 + 34585 0.72 0.688049
Target:  5'- uCACGc--GGCGCGGCGUCUCGGuggGACGc -3'
miRNA:   3'- -GUGUuuuCCGUGCCGCGGGGCU---UUGC- -5'
5395 3' -54.3 NC_001798.1 + 34732 0.67 0.933088
Target:  5'- gGCG--AGGguCGG-GCCCgGGAGCGg -3'
miRNA:   3'- gUGUuuUCCguGCCgCGGGgCUUUGC- -5'
5395 3' -54.3 NC_001798.1 + 34783 0.77 0.447798
Target:  5'- aCGCGGAAacgccgccGGCGCGGCccgggGCCCCGggGCc -3'
miRNA:   3'- -GUGUUUU--------CCGUGCCG-----CGGGGCuuUGc -5'
5395 3' -54.3 NC_001798.1 + 34949 0.68 0.889556
Target:  5'- uCGCGAAc-GCGCGGCGCCggagggggcggccgCCGAGguGCGg -3'
miRNA:   3'- -GUGUUUucCGUGCCGCGG--------------GGCUU--UGC- -5'
5395 3' -54.3 NC_001798.1 + 35321 0.68 0.90465
Target:  5'- -----cGGGCACGGCGCCcgcaaCCGcaGAGCa -3'
miRNA:   3'- guguuuUCCGUGCCGCGG-----GGC--UUUGc -5'
5395 3' -54.3 NC_001798.1 + 35435 0.67 0.933088
Target:  5'- gGCGGGAGGCGugggccgcUGGCGCCgCGGccCGu -3'
miRNA:   3'- gUGUUUUCCGU--------GCCGCGGgGCUuuGC- -5'
5395 3' -54.3 NC_001798.1 + 35543 0.69 0.830504
Target:  5'- gGCGcgGGGCGuugccggccCGGCccgGCCCCGGAGCc -3'
miRNA:   3'- gUGUuuUCCGU---------GCCG---CGGGGCUUUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.