miRNA display CGI


Results 81 - 100 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5395 3' -54.3 NC_001798.1 + 36310 0.67 0.933088
Target:  5'- gGCGGcGGGGCGCGG-GCCggggCCGggGCu -3'
miRNA:   3'- gUGUU-UUCCGUGCCgCGG----GGCuuUGc -5'
5395 3' -54.3 NC_001798.1 + 36516 0.68 0.884718
Target:  5'- gGCGGGGGcGCGCGGCGgCCgGGcgggGGCGc -3'
miRNA:   3'- gUGUUUUC-CGUGCCGCgGGgCU----UUGC- -5'
5395 3' -54.3 NC_001798.1 + 36558 0.68 0.884718
Target:  5'- gGCGGGGGcGCGCGGCGgCCgGGcgggGGCGc -3'
miRNA:   3'- gUGUUUUC-CGUGCCGCgGGgCU----UUGC- -5'
5395 3' -54.3 NC_001798.1 + 36600 0.68 0.884718
Target:  5'- gGCGGGGGcGCGCGGCGgCCgGGcgggGGCGc -3'
miRNA:   3'- gUGUUUUC-CGUGCCGCgGGgCU----UUGC- -5'
5395 3' -54.3 NC_001798.1 + 37208 0.73 0.667563
Target:  5'- aACGAcGGGCGCGGCGCC--GGAGCu -3'
miRNA:   3'- gUGUUuUCCGUGCCGCGGggCUUUGc -5'
5395 3' -54.3 NC_001798.1 + 37885 0.68 0.90465
Target:  5'- aGCGAAgguguuguaGGGcCGCGGaUGCCCCGAGccaGCa -3'
miRNA:   3'- gUGUUU---------UCC-GUGCC-GCGGGGCUU---UGc -5'
5395 3' -54.3 NC_001798.1 + 39394 0.73 0.636635
Target:  5'- gGCAGAGGGCGCcuuuCGCUCCGGGACc -3'
miRNA:   3'- gUGUUUUCCGUGcc--GCGGGGCUUUGc -5'
5395 3' -54.3 NC_001798.1 + 39871 0.71 0.776819
Target:  5'- gGCuucGGGGGUGcCGGCGUCCuCGggGCGg -3'
miRNA:   3'- gUGu--UUUCCGU-GCCGCGGG-GCuuUGC- -5'
5395 3' -54.3 NC_001798.1 + 40278 0.68 0.877613
Target:  5'- gCACGAccGGGGC-CGGCuuUCCGAAACu -3'
miRNA:   3'- -GUGUU--UUCCGuGCCGcgGGGCUUUGc -5'
5395 3' -54.3 NC_001798.1 + 40573 0.7 0.813255
Target:  5'- gACGugcGAGGGUGCGuaGgCCCGAGGCGg -3'
miRNA:   3'- gUGU---UUUCCGUGCcgCgGGGCUUUGC- -5'
5395 3' -54.3 NC_001798.1 + 40744 0.67 0.927887
Target:  5'- aGCAcAGGcGCACGGCGauaCCgGAGAgGa -3'
miRNA:   3'- gUGUuUUC-CGUGCCGCg--GGgCUUUgC- -5'
5395 3' -54.3 NC_001798.1 + 40931 0.73 0.626307
Target:  5'- aACAGGGGGUgugugaucgcGCaGGCGCCCCGGGAg- -3'
miRNA:   3'- gUGUUUUCCG----------UG-CCGCGGGGCUUUgc -5'
5395 3' -54.3 NC_001798.1 + 41518 0.69 0.86954
Target:  5'- cCACAcGAGGGCGguaucguUGuGCGCCCCGGcggGGCGc -3'
miRNA:   3'- -GUGU-UUUCCGU-------GC-CGCGGGGCU---UUGC- -5'
5395 3' -54.3 NC_001798.1 + 41847 0.67 0.933088
Target:  5'- aCACGAGAGGCuuugguucAgGGCGCCgcggCCGggGa- -3'
miRNA:   3'- -GUGUUUUCCG--------UgCCGCGG----GGCuuUgc -5'
5395 3' -54.3 NC_001798.1 + 43025 0.71 0.775878
Target:  5'- --gGGGGGaGCGCGGgGCCCCGGGcgcaaauGCGg -3'
miRNA:   3'- gugUUUUC-CGUGCCgCGGGGCUU-------UGC- -5'
5395 3' -54.3 NC_001798.1 + 44023 0.68 0.884718
Target:  5'- uGCAGAucguacguGGCucCGGCGCCCCccAAGCGc -3'
miRNA:   3'- gUGUUUu-------CCGu-GCCGCGGGGc-UUUGC- -5'
5395 3' -54.3 NC_001798.1 + 44274 0.66 0.958893
Target:  5'- aUACAGGGGG-GCGGUGCUgccgcugCCGAuGCGg -3'
miRNA:   3'- -GUGUUUUCCgUGCCGCGG-------GGCUuUGC- -5'
5395 3' -54.3 NC_001798.1 + 44870 0.66 0.95148
Target:  5'- gCGCAGAGccGCGCGcGUGUUCCGGGAUGg -3'
miRNA:   3'- -GUGUUUUc-CGUGC-CGCGGGGCUUUGC- -5'
5395 3' -54.3 NC_001798.1 + 45086 0.66 0.947241
Target:  5'- gCGCcucguGAAGGCGC-GCGCCCUGGccCGc -3'
miRNA:   3'- -GUGu----UUUCCGUGcCGCGGGGCUuuGC- -5'
5395 3' -54.3 NC_001798.1 + 45142 0.72 0.718401
Target:  5'- -uCGAGAGGCugGcGCGCcaccaCCCGGGACu -3'
miRNA:   3'- guGUUUUCCGugC-CGCG-----GGGCUUUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.