miRNA display CGI


Results 1 - 20 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5395 3' -54.3 NC_001798.1 + 154424 0.7 0.821967
Target:  5'- gGCGGgcGGCAgGGCaGCCCCGc-GCGc -3'
miRNA:   3'- gUGUUuuCCGUgCCG-CGGGGCuuUGC- -5'
5395 3' -54.3 NC_001798.1 + 154158 0.69 0.870284
Target:  5'- gGCGGcuGGGCuCGGCGUaggCCCGGAGCc -3'
miRNA:   3'- gUGUUu-UCCGuGCCGCG---GGGCUUUGc -5'
5395 3' -54.3 NC_001798.1 + 154104 0.66 0.95926
Target:  5'- nGCGGccGGCGcCGGgGaCCCCGGcGGCGg -3'
miRNA:   3'- gUGUUuuCCGU-GCCgC-GGGGCU-UUGC- -5'
5395 3' -54.3 NC_001798.1 + 154082 0.67 0.910822
Target:  5'- ------cGGCACGGCuggaGCgCCGggGCGc -3'
miRNA:   3'- guguuuuCCGUGCCG----CGgGGCuuUGC- -5'
5395 3' -54.3 NC_001798.1 + 154045 0.7 0.813255
Target:  5'- gCGCGccGGGGCGCGGCacggcuggaGCgCCGggGCGc -3'
miRNA:   3'- -GUGUu-UUCCGUGCCG---------CGgGGCuuUGC- -5'
5395 3' -54.3 NC_001798.1 + 153821 0.67 0.916753
Target:  5'- gGCGGcAGGCGCGGCG-UgCGggGCc -3'
miRNA:   3'- gUGUUuUCCGUGCCGCgGgGCuuUGc -5'
5395 3' -54.3 NC_001798.1 + 153048 0.72 0.718401
Target:  5'- gCGCGGuuGGC-CGGCGCcgcccCCUGggGCGg -3'
miRNA:   3'- -GUGUUuuCCGuGCCGCG-----GGGCuuUGC- -5'
5395 3' -54.3 NC_001798.1 + 152624 0.68 0.877613
Target:  5'- aCGCAGAuGGGagucccccCGGCGCCCCGccGGCGc -3'
miRNA:   3'- -GUGUUU-UCCgu------GCCGCGGGGCu-UUGC- -5'
5395 3' -54.3 NC_001798.1 + 151834 0.67 0.933088
Target:  5'- -uUAGAGGGCGCGGgGCgU-GAGGCGg -3'
miRNA:   3'- guGUUUUCCGUGCCgCGgGgCUUUGC- -5'
5395 3' -54.3 NC_001798.1 + 150760 0.67 0.938047
Target:  5'- cCGCGAc-GGCAgGGcCGCCCCcAGACc -3'
miRNA:   3'- -GUGUUuuCCGUgCC-GCGGGGcUUUGc -5'
5395 3' -54.3 NC_001798.1 + 150552 0.71 0.767357
Target:  5'- gACAAAGgagagcGGCcCGGgGCCCgCGggGCGg -3'
miRNA:   3'- gUGUUUU------CCGuGCCgCGGG-GCuuUGC- -5'
5395 3' -54.3 NC_001798.1 + 150469 0.77 0.4296
Target:  5'- gCGCGGGGGcGCGCGGCgcGCCCCGAcGACu -3'
miRNA:   3'- -GUGUUUUC-CGUGCCG--CGGGGCU-UUGc -5'
5395 3' -54.3 NC_001798.1 + 150407 0.7 0.786148
Target:  5'- uCGCAGAcaccacggGGGCgGCGGCGgCgCGggGCGg -3'
miRNA:   3'- -GUGUUU--------UCCG-UGCCGCgGgGCuuUGC- -5'
5395 3' -54.3 NC_001798.1 + 150375 0.67 0.938047
Target:  5'- gGCGGgcGGCGCGG-GCCCgGccGCGu -3'
miRNA:   3'- gUGUUuuCCGUGCCgCGGGgCuuUGC- -5'
5395 3' -54.3 NC_001798.1 + 149972 0.79 0.353426
Target:  5'- aCGCcgacGGGGGCGCGGCGCCcgcggacgCCGggGCGa -3'
miRNA:   3'- -GUGu---UUUCCGUGCCGCGG--------GGCuuUGC- -5'
5395 3' -54.3 NC_001798.1 + 149933 0.68 0.90465
Target:  5'- aGgAGGAGGCgGCGGCGaccgcggCCUGGGACGa -3'
miRNA:   3'- gUgUUUUCCG-UGCCGCg------GGGCUUUGC- -5'
5395 3' -54.3 NC_001798.1 + 148400 0.67 0.916753
Target:  5'- gGCAGGugugcGGGCGgGGUggGCgCCGggGCGg -3'
miRNA:   3'- gUGUUU-----UCCGUgCCG--CGgGGCuuUGC- -5'
5395 3' -54.3 NC_001798.1 + 147228 0.69 0.854981
Target:  5'- gGCGGA--GCGCgGGgGCCCCGggGCc -3'
miRNA:   3'- gUGUUUucCGUG-CCgCGGGGCuuUGc -5'
5395 3' -54.3 NC_001798.1 + 147186 0.66 0.947241
Target:  5'- gGCGGAAGGCGucccccgccCGGCGgUCCGGccCGg -3'
miRNA:   3'- gUGUUUUCCGU---------GCCGCgGGGCUuuGC- -5'
5395 3' -54.3 NC_001798.1 + 147108 0.75 0.534455
Target:  5'- uCGCGAAAGGCGCgaaaGGgGCCCCcgGAGGCu -3'
miRNA:   3'- -GUGUUUUCCGUG----CCgCGGGG--CUUUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.