miRNA display CGI


Results 21 - 40 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5395 3' -54.3 NC_001798.1 + 145793 0.67 0.938047
Target:  5'- aCACAGGAGcGCGCgGGCGgCa-GAAACGc -3'
miRNA:   3'- -GUGUUUUC-CGUG-CCGCgGggCUUUGC- -5'
5395 3' -54.3 NC_001798.1 + 143774 0.74 0.595383
Target:  5'- uCGCGuucuGGGCAUgGGCGCCCCaGAGCa -3'
miRNA:   3'- -GUGUuu--UCCGUG-CCGCGGGGcUUUGc -5'
5395 3' -54.3 NC_001798.1 + 143136 0.69 0.830504
Target:  5'- uGCGcuGGcGCGCGGcCGuCCCCGAaAACGa -3'
miRNA:   3'- gUGUuuUC-CGUGCC-GC-GGGGCU-UUGC- -5'
5395 3' -54.3 NC_001798.1 + 142472 0.73 0.646959
Target:  5'- aACGAucuacGGgACGGC-CCCCGAGGCGg -3'
miRNA:   3'- gUGUUuu---CCgUGCCGcGGGGCUUUGC- -5'
5395 3' -54.3 NC_001798.1 + 140764 0.69 0.870284
Target:  5'- gACGcgGGGCACGuGCGCUgUGAggUGc -3'
miRNA:   3'- gUGUuuUCCGUGC-CGCGGgGCUuuGC- -5'
5395 3' -54.3 NC_001798.1 + 139701 0.67 0.922441
Target:  5'- uGCGu--GGuCACgGGCGCCaCCGAAucGCGg -3'
miRNA:   3'- gUGUuuuCC-GUG-CCGCGG-GGCUU--UGC- -5'
5395 3' -54.3 NC_001798.1 + 136795 0.66 0.95148
Target:  5'- aGgAGAAGGCAgCGGaCGCgCUCGAAGgGa -3'
miRNA:   3'- gUgUUUUCCGU-GCC-GCG-GGGCUUUgC- -5'
5395 3' -54.3 NC_001798.1 + 135791 0.66 0.942764
Target:  5'- cCGgAGGAGGC-CGugugcGCGgCCCGggGCGu -3'
miRNA:   3'- -GUgUUUUCCGuGC-----CGCgGGGCuuUGC- -5'
5395 3' -54.3 NC_001798.1 + 135263 0.68 0.88261
Target:  5'- cCugGAAAGGCuggacgcgcuggugGCGGcCGCCCCcucGGAGCc -3'
miRNA:   3'- -GugUUUUCCG--------------UGCC-GCGGGG---CUUUGc -5'
5395 3' -54.3 NC_001798.1 + 132155 0.7 0.821967
Target:  5'- -cCGGcGGGCGgGGCGCCCCccccGGACGc -3'
miRNA:   3'- guGUUuUCCGUgCCGCGGGGc---UUUGC- -5'
5395 3' -54.3 NC_001798.1 + 131222 0.69 0.847018
Target:  5'- gGCGuAAAGGCAgGGaaaccuGUCCCGGAACa -3'
miRNA:   3'- gUGU-UUUCCGUgCCg-----CGGGGCUUUGc -5'
5395 3' -54.3 NC_001798.1 + 130507 0.7 0.810609
Target:  5'- uCGCAGGccAGGCcgacgaugccggugGCGGCgaugGCCCCGAggUGg -3'
miRNA:   3'- -GUGUUU--UCCG--------------UGCCG----CGGGGCUuuGC- -5'
5395 3' -54.3 NC_001798.1 + 130368 0.73 0.657271
Target:  5'- aUACAGGuAGGCGCGcGUGCaCCGAAGCa -3'
miRNA:   3'- -GUGUUU-UCCGUGC-CGCGgGGCUUUGc -5'
5395 3' -54.3 NC_001798.1 + 130064 0.66 0.942764
Target:  5'- cCACGGugucguaaauGGGCuCGGCGUcgggcacaggCCCGggGCGu -3'
miRNA:   3'- -GUGUUu---------UCCGuGCCGCG----------GGGCuuUGC- -5'
5395 3' -54.3 NC_001798.1 + 129024 0.66 0.942764
Target:  5'- gGCGAaaaAAGGCGauGCuccGCCCCGGAuCGg -3'
miRNA:   3'- gUGUU---UUCCGUgcCG---CGGGGCUUuGC- -5'
5395 3' -54.3 NC_001798.1 + 128864 0.68 0.897587
Target:  5'- gUACGAGGaccugauGGCGCGGCGaucgCCgGAGGCGu -3'
miRNA:   3'- -GUGUUUU-------CCGUGCCGCg---GGgCUUUGC- -5'
5395 3' -54.3 NC_001798.1 + 127921 0.69 0.870284
Target:  5'- cCACGu-GGGCaacccgacgGCGGgGCCCCG-GGCGa -3'
miRNA:   3'- -GUGUuuUCCG---------UGCCgCGGGGCuUUGC- -5'
5395 3' -54.3 NC_001798.1 + 127751 0.66 0.955486
Target:  5'- cCGCAAcacccGGCGCcaaGCGCCCCGcGGACc -3'
miRNA:   3'- -GUGUUuu---CCGUGc--CGCGGGGC-UUUGc -5'
5395 3' -54.3 NC_001798.1 + 127270 0.66 0.947241
Target:  5'- gACGucGGGCugGCGGUcgaucucuacGCCCUGggGCa -3'
miRNA:   3'- gUGUuuUCCG--UGCCG----------CGGGGCuuUGc -5'
5395 3' -54.3 NC_001798.1 + 127172 0.67 0.916753
Target:  5'- aCACucugguGGGGCACGGguacaaccaGCCaCCGGAGCu -3'
miRNA:   3'- -GUGuu----UUCCGUGCCg--------CGG-GGCUUUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.