miRNA display CGI


Results 41 - 60 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5395 3' -54.3 NC_001798.1 + 125891 0.66 0.942764
Target:  5'- cCACuuggaauuGGAGGCGCGGCuaaaGUCCCGcgcGCGc -3'
miRNA:   3'- -GUGu-------UUUCCGUGCCG----CGGGGCuu-UGC- -5'
5395 3' -54.3 NC_001798.1 + 125251 0.75 0.548507
Target:  5'- uGCGuuGGGGCACGGCGUccuccggcgcgcacuCCCGAAACc -3'
miRNA:   3'- gUGUu-UUCCGUGCCGCG---------------GGGCUUUGc -5'
5395 3' -54.3 NC_001798.1 + 125192 0.69 0.838857
Target:  5'- -cCGAAAGGCuucggaGCGGUGCagggCCUGAAACGu -3'
miRNA:   3'- guGUUUUCCG------UGCCGCG----GGGCUUUGC- -5'
5395 3' -54.3 NC_001798.1 + 124078 0.67 0.916753
Target:  5'- gGgAGGAGGCgGCGccuGCGCCCCGA--CGg -3'
miRNA:   3'- gUgUUUUCCG-UGC---CGCGGGGCUuuGC- -5'
5395 3' -54.3 NC_001798.1 + 123366 0.75 0.524497
Target:  5'- gCACAGcGGGCACucuGGCGUCCCcAGGCGa -3'
miRNA:   3'- -GUGUUuUCCGUG---CCGCGGGGcUUUGC- -5'
5395 3' -54.3 NC_001798.1 + 122111 0.69 0.850228
Target:  5'- gGCGGGGGGCGCuuugccagccgggggGGC-CCCCGGGccGCGg -3'
miRNA:   3'- gUGUUUUCCGUG---------------CCGcGGGGCUU--UGC- -5'
5395 3' -54.3 NC_001798.1 + 121693 0.66 0.95926
Target:  5'- gGCuGGGGGcCGCGGCucccGCCgCCGcGACGg -3'
miRNA:   3'- gUGuUUUCC-GUGCCG----CGG-GGCuUUGC- -5'
5395 3' -54.3 NC_001798.1 + 121276 0.67 0.916753
Target:  5'- cCGCccucGuGCGCGGcCGCCCCGAcgguggGGCGg -3'
miRNA:   3'- -GUGuuuuC-CGUGCC-GCGGGGCU------UUGC- -5'
5395 3' -54.3 NC_001798.1 + 121047 0.67 0.938047
Target:  5'- aCACAGcguauAAGcGCACGuGCGCCCgCGGgccccgagGACGc -3'
miRNA:   3'- -GUGUU-----UUC-CGUGC-CGCGGG-GCU--------UUGC- -5'
5395 3' -54.3 NC_001798.1 + 118578 0.66 0.948965
Target:  5'- aGCAGAcaucgcgauccccucGGGUAUcucGCGCCCCGAugccGCGg -3'
miRNA:   3'- gUGUUU---------------UCCGUGc--CGCGGGGCUu---UGC- -5'
5395 3' -54.3 NC_001798.1 + 115507 0.66 0.946804
Target:  5'- cCGCGAAuccguacgGGGCGuacgucgcggcccCGGCcgGCCCCGgcGCGg -3'
miRNA:   3'- -GUGUUU--------UCCGU-------------GCCG--CGGGGCuuUGC- -5'
5395 3' -54.3 NC_001798.1 + 113494 0.68 0.890918
Target:  5'- uCAUggGcGGCGCGGCccugugcGCCCUGGuGGCGg -3'
miRNA:   3'- -GUGuuUuCCGUGCCG-------CGGGGCU-UUGC- -5'
5395 3' -54.3 NC_001798.1 + 111591 0.71 0.776819
Target:  5'- aGCGGGGGGCccggcgggGCGGCcuccuggaGCCCCgGggGCGg -3'
miRNA:   3'- gUGUUUUCCG--------UGCCG--------CGGGG-CuuUGC- -5'
5395 3' -54.3 NC_001798.1 + 110220 0.72 0.728381
Target:  5'- uGCGAAGGGCACGcGCGggagauugagCCGAAGCGg -3'
miRNA:   3'- gUGUUUUCCGUGC-CGCgg--------GGCUUUGC- -5'
5395 3' -54.3 NC_001798.1 + 109553 0.75 0.534455
Target:  5'- cCGCGGccuauGGCGCGGUgGCCCCGAGcGCGg -3'
miRNA:   3'- -GUGUUuu---CCGUGCCG-CGGGGCUU-UGC- -5'
5395 3' -54.3 NC_001798.1 + 108292 0.68 0.884718
Target:  5'- gCGCGGAc-GCuuGGCGCCCCcGGGCGa -3'
miRNA:   3'- -GUGUUUucCGugCCGCGGGGcUUUGC- -5'
5395 3' -54.3 NC_001798.1 + 106905 0.68 0.891595
Target:  5'- gGCA--GGuGCugGGgGCCuCCGAGACc -3'
miRNA:   3'- gUGUuuUC-CGugCCgCGG-GGCUUUGc -5'
5395 3' -54.3 NC_001798.1 + 106710 0.67 0.938047
Target:  5'- gACGGcc-GCGCGGCGUCCCGuccuAGCc -3'
miRNA:   3'- gUGUUuucCGUGCCGCGGGGCu---UUGc -5'
5395 3' -54.3 NC_001798.1 + 105613 0.71 0.776819
Target:  5'- gGCGGcGGGCgggcgacgACGGCGCUCCGGGAa- -3'
miRNA:   3'- gUGUUuUCCG--------UGCCGCGGGGCUUUgc -5'
5395 3' -54.3 NC_001798.1 + 105203 0.69 0.830504
Target:  5'- cCGCGGuGGGCgACGGCgcuGCCCCGuccgcAGCGc -3'
miRNA:   3'- -GUGUUuUCCG-UGCCG---CGGGGCu----UUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.