miRNA display CGI


Results 61 - 80 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5395 3' -54.3 NC_001798.1 + 104871 0.71 0.776819
Target:  5'- aUACAGAcacaGCACGGCGCaCUCGAAGgCGg -3'
miRNA:   3'- -GUGUUUuc--CGUGCCGCG-GGGCUUU-GC- -5'
5395 3' -54.3 NC_001798.1 + 104170 0.66 0.947241
Target:  5'- gGCGuccAGGCacaggGCGGCcaGCCCCGGAAa- -3'
miRNA:   3'- gUGUuu-UCCG-----UGCCG--CGGGGCUUUgc -5'
5395 3' -54.3 NC_001798.1 + 103854 0.66 0.955486
Target:  5'- cCACGGAcAGGUACuGGgGaaugaaCCCGAGACa -3'
miRNA:   3'- -GUGUUU-UCCGUG-CCgCg-----GGGCUUUGc -5'
5395 3' -54.3 NC_001798.1 + 102652 0.73 0.636635
Target:  5'- gGCGGAGGGgcCGgGGCGCCcgaugCCGAAACGg -3'
miRNA:   3'- gUGUUUUCC--GUgCCGCGG-----GGCUUUGC- -5'
5395 3' -54.3 NC_001798.1 + 102575 0.68 0.90465
Target:  5'- gGCG--GGGCGCGGauuGCCCgGuGACGa -3'
miRNA:   3'- gUGUuuUCCGUGCCg--CGGGgCuUUGC- -5'
5395 3' -54.3 NC_001798.1 + 102198 0.67 0.927887
Target:  5'- aGCcu-GGcGCGCGGCGCgCCGGGAg- -3'
miRNA:   3'- gUGuuuUC-CGUGCCGCGgGGCUUUgc -5'
5395 3' -54.3 NC_001798.1 + 101122 0.73 0.667563
Target:  5'- --aGAAGGGCACGaGCGCCCUGcucAGCu -3'
miRNA:   3'- gugUUUUCCGUGC-CGCGGGGCu--UUGc -5'
5395 3' -54.3 NC_001798.1 + 98581 0.69 0.83803
Target:  5'- cCGCGGu-GGCGuCGGCgGCCCCGGcggccccGGCGg -3'
miRNA:   3'- -GUGUUuuCCGU-GCCG-CGGGGCU-------UUGC- -5'
5395 3' -54.3 NC_001798.1 + 97540 0.67 0.916753
Target:  5'- gGCGGAGgcguGGCGCGGggaCGCCCgCGAgcgagGACGg -3'
miRNA:   3'- gUGUUUU----CCGUGCC---GCGGG-GCU-----UUGC- -5'
5395 3' -54.3 NC_001798.1 + 97471 0.68 0.891595
Target:  5'- gGCuGGGGGCcgGCGGCGCgaCCGggGgGg -3'
miRNA:   3'- gUGuUUUCCG--UGCCGCGg-GGCuuUgC- -5'
5395 3' -54.3 NC_001798.1 + 97440 0.67 0.910822
Target:  5'- gACGAgGAGGCGCuGCGCCgCGugcuGGCGc -3'
miRNA:   3'- gUGUU-UUCCGUGcCGCGGgGCu---UUGC- -5'
5395 3' -54.3 NC_001798.1 + 95690 0.68 0.89824
Target:  5'- gGCGgcGGGGGCGgcCGGCGUcgCCCGAaAGCGg -3'
miRNA:   3'- gUGU--UUUCCGU--GCCGCG--GGGCU-UUGC- -5'
5395 3' -54.3 NC_001798.1 + 95579 0.66 0.955873
Target:  5'- cCACGAggcgGAGGCccuggucagccagcuCGGCGCCgCCGggGa- -3'
miRNA:   3'- -GUGUU----UUCCGu--------------GCCGCGG-GGCuuUgc -5'
5395 3' -54.3 NC_001798.1 + 95007 0.71 0.748076
Target:  5'- cCGCAGGGcGGCGCGG-GCCUgGAGGCc -3'
miRNA:   3'- -GUGUUUU-CCGUGCCgCGGGgCUUUGc -5'
5395 3' -54.3 NC_001798.1 + 94541 0.66 0.951067
Target:  5'- uCGC---GGGCGCGaGCGCCaacgcguCCGAGGCc -3'
miRNA:   3'- -GUGuuuUCCGUGC-CGCGG-------GGCUUUGc -5'
5395 3' -54.3 NC_001798.1 + 93793 0.67 0.933088
Target:  5'- -cCGGGGGGCcauUGGgGUCUCGGAACGa -3'
miRNA:   3'- guGUUUUCCGu--GCCgCGGGGCUUUGC- -5'
5395 3' -54.3 NC_001798.1 + 93496 0.77 0.447798
Target:  5'- gUACGAGGGGCgccccACGGCGCCCCucgucGGCGg -3'
miRNA:   3'- -GUGUUUUCCG-----UGCCGCGGGGcu---UUGC- -5'
5395 3' -54.3 NC_001798.1 + 93267 0.66 0.95926
Target:  5'- cCGCGGcccGCGcCGGCGCCgUCGggGCGu -3'
miRNA:   3'- -GUGUUuucCGU-GCCGCGG-GGCuuUGC- -5'
5395 3' -54.3 NC_001798.1 + 93022 0.7 0.795337
Target:  5'- cCAC-GAGGGCGCGGCccuCCCCGccGACa -3'
miRNA:   3'- -GUGuUUUCCGUGCCGc--GGGGCu-UUGc -5'
5395 3' -54.3 NC_001798.1 + 90079 0.7 0.804376
Target:  5'- gACGAcgGGGGC-CGGCagGCCCCugGAGGCGa -3'
miRNA:   3'- gUGUU--UUCCGuGCCG--CGGGG--CUUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.