miRNA display CGI


Results 61 - 80 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5395 3' -54.3 NC_001798.1 + 25255 0.66 0.95148
Target:  5'- cCGCAGGGcGGC-UGGCGCCgccagccgCCGggGCc -3'
miRNA:   3'- -GUGUUUU-CCGuGCCGCGG--------GGCuuUGc -5'
5395 3' -54.3 NC_001798.1 + 44870 0.66 0.95148
Target:  5'- gCGCAGAGccGCGCGcGUGUUCCGGGAUGg -3'
miRNA:   3'- -GUGUUUUc-CGUGC-CGCGGGGCUUUGC- -5'
5395 3' -54.3 NC_001798.1 + 88054 0.66 0.947241
Target:  5'- gCugGGGGGGCG-GGCucgucCCCUGggGCGg -3'
miRNA:   3'- -GugUUUUCCGUgCCGc----GGGGCuuUGC- -5'
5395 3' -54.3 NC_001798.1 + 115507 0.66 0.946804
Target:  5'- cCGCGAAuccguacgGGGCGuacgucgcggcccCGGCcgGCCCCGgcGCGg -3'
miRNA:   3'- -GUGUUU--------UCCGU-------------GCCG--CGGGGCuuUGC- -5'
5395 3' -54.3 NC_001798.1 + 70329 0.66 0.946804
Target:  5'- gGC-GGAGGCGCGGgcgugcuggcaccCGCuCCUGGAGCa -3'
miRNA:   3'- gUGuUUUCCGUGCC-------------GCG-GGGCUUUGc -5'
5395 3' -54.3 NC_001798.1 + 135791 0.66 0.942764
Target:  5'- cCGgAGGAGGC-CGugugcGCGgCCCGggGCGu -3'
miRNA:   3'- -GUgUUUUCCGuGC-----CGCgGGGCuuUGC- -5'
5395 3' -54.3 NC_001798.1 + 125891 0.66 0.942764
Target:  5'- cCACuuggaauuGGAGGCGCGGCuaaaGUCCCGcgcGCGc -3'
miRNA:   3'- -GUGu-------UUUCCGUGCCG----CGGGGCuu-UGC- -5'
5395 3' -54.3 NC_001798.1 + 130064 0.66 0.942764
Target:  5'- cCACGGugucguaaauGGGCuCGGCGUcgggcacaggCCCGggGCGu -3'
miRNA:   3'- -GUGUUu---------UCCGuGCCGCG----------GGGCuuUGC- -5'
5395 3' -54.3 NC_001798.1 + 129024 0.66 0.942764
Target:  5'- gGCGAaaaAAGGCGauGCuccGCCCCGGAuCGg -3'
miRNA:   3'- gUGUU---UUCCGUgcCG---CGGGGCUUuGC- -5'
5395 3' -54.3 NC_001798.1 + 60998 0.66 0.942764
Target:  5'- gGCGGAGGGgGCGGaugaCGCggaCCGGAugGg -3'
miRNA:   3'- gUGUUUUCCgUGCC----GCGg--GGCUUugC- -5'
5395 3' -54.3 NC_001798.1 + 86261 0.66 0.947241
Target:  5'- gCACGgccGGGGGCGCgGGCGCaCCG--GCGg -3'
miRNA:   3'- -GUGU---UUUCCGUG-CCGCGgGGCuuUGC- -5'
5395 3' -54.3 NC_001798.1 + 147186 0.66 0.947241
Target:  5'- gGCGGAAGGCGucccccgccCGGCGgUCCGGccCGg -3'
miRNA:   3'- gUGUUUUCCGU---------GCCGCgGGGCUuuGC- -5'
5395 3' -54.3 NC_001798.1 + 31341 0.66 0.95148
Target:  5'- gGCGGGGGGCGCgcgcaGGCGCggCGGGugGg -3'
miRNA:   3'- gUGUUUUCCGUG-----CCGCGggGCUUugC- -5'
5395 3' -54.3 NC_001798.1 + 9945 0.66 0.95148
Target:  5'- uCGCGGcGGGgGCGuaGUCCUGGAACa -3'
miRNA:   3'- -GUGUUuUCCgUGCcgCGGGGCUUUGc -5'
5395 3' -54.3 NC_001798.1 + 94541 0.66 0.951067
Target:  5'- uCGC---GGGCGCGaGCGCCaacgcguCCGAGGCc -3'
miRNA:   3'- -GUGuuuUCCGUGC-CGCGG-------GGCUUUGc -5'
5395 3' -54.3 NC_001798.1 + 118578 0.66 0.948965
Target:  5'- aGCAGAcaucgcgauccccucGGGUAUcucGCGCCCCGAugccGCGg -3'
miRNA:   3'- gUGUUU---------------UCCGUGc--CGCGGGGCUu---UGC- -5'
5395 3' -54.3 NC_001798.1 + 104170 0.66 0.947241
Target:  5'- gGCGuccAGGCacaggGCGGCcaGCCCCGGAAa- -3'
miRNA:   3'- gUGUuu-UCCG-----UGCCG--CGGGGCUUUgc -5'
5395 3' -54.3 NC_001798.1 + 45086 0.66 0.947241
Target:  5'- gCGCcucguGAAGGCGC-GCGCCCUGGccCGc -3'
miRNA:   3'- -GUGu----UUUCCGUGcCGCGGGGCUuuGC- -5'
5395 3' -54.3 NC_001798.1 + 127270 0.66 0.947241
Target:  5'- gACGucGGGCugGCGGUcgaucucuacGCCCUGggGCa -3'
miRNA:   3'- gUGUuuUCCG--UGCCG----------CGGGGCuuUGc -5'
5395 3' -54.3 NC_001798.1 + 29494 0.66 0.947241
Target:  5'- -----cGGGgACGGggcCGCCCCGAGAgGg -3'
miRNA:   3'- guguuuUCCgUGCC---GCGGGGCUUUgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.