miRNA display CGI


Results 1 - 20 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5395 5' -62.9 NC_001798.1 + 76674 0.65 0.699807
Target:  5'- -gCGGCCaaGAUGaCGGCGGagcucgcuccggagGCGCGCu -3'
miRNA:   3'- ggGCCGGgcCUGCaGCCGCC--------------UGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 139936 0.66 0.693246
Target:  5'- gCgGGCCCuGGCGgcgcacgggGGCGaaGACGCGCg -3'
miRNA:   3'- gGgCCGGGcCUGCag-------CCGC--CUGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 2467 0.66 0.693246
Target:  5'- gCgGGUCgGGGCccUCGGCGGGCcggcgggucaGCGCc -3'
miRNA:   3'- gGgCCGGgCCUGc-AGCCGCCUG----------UGCG- -5'
5395 5' -62.9 NC_001798.1 + 2635 0.66 0.693246
Target:  5'- cCCUGGCCgGGGCGg-GGCucuugcgcuuGCGCGCc -3'
miRNA:   3'- -GGGCCGGgCCUGCagCCGcc--------UGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 57399 0.66 0.693246
Target:  5'- aCCgGGCCagCGGGuCGU-GGCGGuuGCAuCGCa -3'
miRNA:   3'- -GGgCCGG--GCCU-GCAgCCGCC--UGU-GCG- -5'
5395 5' -62.9 NC_001798.1 + 69094 0.66 0.693246
Target:  5'- gCCC-GCCCGGACcccagGGCGGAgGCc- -3'
miRNA:   3'- -GGGcCGGGCCUGcag--CCGCCUgUGcg -5'
5395 5' -62.9 NC_001798.1 + 75119 0.66 0.693246
Target:  5'- cCCCGcaGUCCGGGCagggCGGCGGcgacgACGgGCc -3'
miRNA:   3'- -GGGC--CGGGCCUGca--GCCGCC-----UGUgCG- -5'
5395 5' -62.9 NC_001798.1 + 97238 0.66 0.693246
Target:  5'- gCUGGCgcuguUCGGGCGgcgGGCGGAgcacuucgauCGCGCg -3'
miRNA:   3'- gGGCCG-----GGCCUGCag-CCGCCU----------GUGCG- -5'
5395 5' -62.9 NC_001798.1 + 143357 0.66 0.693246
Target:  5'- uCCCGGUCCGGcucucCGUCGaGaGGcccCACGUg -3'
miRNA:   3'- -GGGCCGGGCCu----GCAGC-CgCCu--GUGCG- -5'
5395 5' -62.9 NC_001798.1 + 10748 0.66 0.693246
Target:  5'- gUgGGCCCGGguGCGuUCcGCGGGCGC-Cg -3'
miRNA:   3'- gGgCCGGGCC--UGC-AGcCGCCUGUGcG- -5'
5395 5' -62.9 NC_001798.1 + 17115 0.66 0.693246
Target:  5'- uCCCGGCCgcccgcgagCGGuaguGCG-CGGUGaGGCGCGa -3'
miRNA:   3'- -GGGCCGG---------GCC----UGCaGCCGC-CUGUGCg -5'
5395 5' -62.9 NC_001798.1 + 140505 0.66 0.693246
Target:  5'- aCCCGGCCaaccuucCGg-GGUGGACGCGg -3'
miRNA:   3'- -GGGCCGGgccu---GCagCCGCCUGUGCg -5'
5395 5' -62.9 NC_001798.1 + 132696 0.66 0.693246
Target:  5'- aCgCGGCgCaGGCG-CGGgGGuCGCGCa -3'
miRNA:   3'- -GgGCCGgGcCUGCaGCCgCCuGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 130187 0.66 0.693246
Target:  5'- aCCGGUcgaucUCGG-CGU-GGUGGgACACGCu -3'
miRNA:   3'- gGGCCG-----GGCCuGCAgCCGCC-UGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 112765 0.66 0.693246
Target:  5'- aUCaGCCCGcGGgGagGGCGGACGCa- -3'
miRNA:   3'- gGGcCGGGC-CUgCagCCGCCUGUGcg -5'
5395 5' -62.9 NC_001798.1 + 111266 0.66 0.693246
Target:  5'- aUCGGCCa--ACGUCGGUucgucGGGCGCGg -3'
miRNA:   3'- gGGCCGGgccUGCAGCCG-----CCUGUGCg -5'
5395 5' -62.9 NC_001798.1 + 99309 0.66 0.683834
Target:  5'- -aCGGCacgaCGGucaacugcauCGUCgaggaGGUGGACGCGCg -3'
miRNA:   3'- ggGCCGg---GCCu---------GCAG-----CCGCCUGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 68089 0.66 0.683834
Target:  5'- aCCUGGCUuuauugagaCGGACGcaCGG-GGcCGCGCa -3'
miRNA:   3'- -GGGCCGG---------GCCUGCa-GCCgCCuGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 16668 0.66 0.683834
Target:  5'- aCCCaagGGCCCGGGauCGUCcaaccGgGGAUAgGCa -3'
miRNA:   3'- -GGG---CCGGGCCU--GCAGc----CgCCUGUgCG- -5'
5395 5' -62.9 NC_001798.1 + 134153 0.66 0.683834
Target:  5'- uCUCGGCCCccgGGGcCGUCG-CGGccgccCGCGCc -3'
miRNA:   3'- -GGGCCGGG---CCU-GCAGCcGCCu----GUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.