miRNA display CGI


Results 61 - 80 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5395 5' -62.9 NC_001798.1 + 16668 0.66 0.683834
Target:  5'- aCCCaagGGCCCGGGauCGUCcaaccGgGGAUAgGCa -3'
miRNA:   3'- -GGG---CCGGGCCU--GCAGc----CgCCUGUgCG- -5'
5395 5' -62.9 NC_001798.1 + 134153 0.66 0.683834
Target:  5'- uCUCGGCCCccgGGGcCGUCG-CGGccgccCGCGCc -3'
miRNA:   3'- -GGGCCGGG---CCU-GCAGCcGCCu----GUGCG- -5'
5395 5' -62.9 NC_001798.1 + 128946 0.66 0.683834
Target:  5'- uUCGcGCCCGGGCGcguuccgggccCGGaGGAgGCGCu -3'
miRNA:   3'- gGGC-CGGGCCUGCa----------GCCgCCUgUGCG- -5'
5395 5' -62.9 NC_001798.1 + 86408 0.66 0.683834
Target:  5'- gCCGGUCgUGGACcagcucgaGGCGGACcccgagGCGCa -3'
miRNA:   3'- gGGCCGG-GCCUGcag-----CCGCCUG------UGCG- -5'
5395 5' -62.9 NC_001798.1 + 83660 0.66 0.683834
Target:  5'- -gCGGCUcgCGGGCGUCugggaugcacuGGCGGGCGgGa -3'
miRNA:   3'- ggGCCGG--GCCUGCAG-----------CCGCCUGUgCg -5'
5395 5' -62.9 NC_001798.1 + 139317 0.67 0.626837
Target:  5'- cCCCGcGUCCGcauCGcCGGCGcccGCGCGCg -3'
miRNA:   3'- -GGGC-CGGGCcu-GCaGCCGCc--UGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 102215 0.67 0.626837
Target:  5'- gCCGGgagucgaCCGGGCG-CGGCucgGGGCGgGCc -3'
miRNA:   3'- gGGCCg------GGCCUGCaGCCG---CCUGUgCG- -5'
5395 5' -62.9 NC_001798.1 + 88165 0.67 0.626837
Target:  5'- aUCCGGUCCuugauGGACGggaccugcgcgCGGCGGGCcaugaGCu -3'
miRNA:   3'- -GGGCCGGG-----CCUGCa----------GCCGCCUGug---CG- -5'
5395 5' -62.9 NC_001798.1 + 56391 0.67 0.626837
Target:  5'- aCCUGccGCUCGGugGggucccgCGGCGGggGCugGUg -3'
miRNA:   3'- -GGGC--CGGGCCugCa------GCCGCC--UGugCG- -5'
5395 5' -62.9 NC_001798.1 + 50202 0.67 0.626837
Target:  5'- aCUCcGCCUGGACGgcgaggaGGUGGAUaugACGCc -3'
miRNA:   3'- -GGGcCGGGCCUGCag-----CCGCCUG---UGCG- -5'
5395 5' -62.9 NC_001798.1 + 147053 0.67 0.617311
Target:  5'- cCCCGG-CCGGAgGggcccccgcaccUCGGCGG-C-CGCc -3'
miRNA:   3'- -GGGCCgGGCCUgC------------AGCCGCCuGuGCG- -5'
5395 5' -62.9 NC_001798.1 + 154108 0.67 0.626837
Target:  5'- gCCGGCgCCGGGgacccCGgCGGCGGGgACcccgGCg -3'
miRNA:   3'- gGGCCG-GGCCU-----GCaGCCGCCUgUG----CG- -5'
5395 5' -62.9 NC_001798.1 + 2671 0.67 0.626837
Target:  5'- cCCgCGGCgCGGA----GGCGGGCGCGg -3'
miRNA:   3'- -GG-GCCGgGCCUgcagCCGCCUGUGCg -5'
5395 5' -62.9 NC_001798.1 + 41544 0.67 0.630648
Target:  5'- cCCCGG-CgGGGCGcaccgcguaaauacaUCGGUggagcGGACugGCa -3'
miRNA:   3'- -GGGCCgGgCCUGC---------------AGCCG-----CCUGugCG- -5'
5395 5' -62.9 NC_001798.1 + 93266 0.67 0.63446
Target:  5'- cCCgCGGCCCGcgccggcGcCGUCGGgGcguaccuGGCGCGCg -3'
miRNA:   3'- -GG-GCCGGGC-------CuGCAGCCgC-------CUGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 60 0.67 0.636366
Target:  5'- --gGGCgcgaaggCGGGCGgcggCGGCGGGCGgGCg -3'
miRNA:   3'- gggCCGg------GCCUGCa---GCCGCCUGUgCG- -5'
5395 5' -62.9 NC_001798.1 + 154398 0.67 0.636366
Target:  5'- --gGGCgcgaaggCGGGCGgcggCGGCGGGCGgGCg -3'
miRNA:   3'- gggCCGg------GCCUGCa---GCCGCCUGUgCG- -5'
5395 5' -62.9 NC_001798.1 + 16605 0.67 0.636366
Target:  5'- -gCGGCCCagGGGC-UCGuGaCGGACgACGCg -3'
miRNA:   3'- ggGCCGGG--CCUGcAGC-C-GCCUG-UGCG- -5'
5395 5' -62.9 NC_001798.1 + 29893 0.67 0.636366
Target:  5'- aCCCGGCUgCGG--GUUGGgGGugGuCGCg -3'
miRNA:   3'- -GGGCCGG-GCCugCAGCCgCCugU-GCG- -5'
5395 5' -62.9 NC_001798.1 + 108214 0.67 0.617311
Target:  5'- gUUGGCCCGcACGUacUGGCGcGACACa- -3'
miRNA:   3'- gGGCCGGGCcUGCA--GCCGC-CUGUGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.