miRNA display CGI


Results 101 - 120 of 319 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5395 5' -62.9 NC_001798.1 + 102215 0.67 0.626837
Target:  5'- gCCGGgagucgaCCGGGCG-CGGCucgGGGCGgGCc -3'
miRNA:   3'- gGGCCg------GGCCUGCaGCCG---CCUGUgCG- -5'
5395 5' -62.9 NC_001798.1 + 23534 0.68 0.569948
Target:  5'- cCUCGGCgCGGACGacgaggaGGCGGGgGUGCc -3'
miRNA:   3'- -GGGCCGgGCCUGCag-----CCGCCUgUGCG- -5'
5395 5' -62.9 NC_001798.1 + 146084 0.68 0.569948
Target:  5'- --gGGUCCgGGGCGa-GGCGGGCGgGCg -3'
miRNA:   3'- gggCCGGG-CCUGCagCCGCCUGUgCG- -5'
5395 5' -62.9 NC_001798.1 + 52569 0.68 0.569948
Target:  5'- gCUgGGCCUGGcCGacaCGGUGGuCGCGUg -3'
miRNA:   3'- -GGgCCGGGCCuGCa--GCCGCCuGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 19849 0.68 0.564315
Target:  5'- -aCGcGCCCGGggcggguaggccagaGCGuUCGGCGGAgCugGUa -3'
miRNA:   3'- ggGC-CGGGCC---------------UGC-AGCCGCCU-GugCG- -5'
5395 5' -62.9 NC_001798.1 + 76581 0.68 0.563377
Target:  5'- aCCGGCCCcgcgccguacgucGACGggGGCGGGCugucccccgaggccACGCg -3'
miRNA:   3'- gGGCCGGGc------------CUGCagCCGCCUG--------------UGCG- -5'
5395 5' -62.9 NC_001798.1 + 149780 0.68 0.560567
Target:  5'- cCCCaGCgCCGGACG-CGGaCGcGACGCu- -3'
miRNA:   3'- -GGGcCG-GGCCUGCaGCC-GC-CUGUGcg -5'
5395 5' -62.9 NC_001798.1 + 103018 0.68 0.560567
Target:  5'- gCCCGGCCagcgcgagcuCGG-CcUCGGCGGccuCGCGUc -3'
miRNA:   3'- -GGGCCGG----------GCCuGcAGCCGCCu--GUGCG- -5'
5395 5' -62.9 NC_001798.1 + 104160 0.68 0.560567
Target:  5'- gCCCcGCCUGGGCGUCcaggcacagGGCGGcCA-GCc -3'
miRNA:   3'- -GGGcCGGGCCUGCAG---------CCGCCuGUgCG- -5'
5395 5' -62.9 NC_001798.1 + 26237 0.68 0.569948
Target:  5'- gCCCGGCgcgCCGGACuUCuGCgaGGACgagGCGCa -3'
miRNA:   3'- -GGGCCG---GGCCUGcAGcCG--CCUG---UGCG- -5'
5395 5' -62.9 NC_001798.1 + 62340 0.68 0.569948
Target:  5'- aCCgCGGCCCcg--GUCGGCcucgaGACGCGCa -3'
miRNA:   3'- -GG-GCCGGGccugCAGCCGc----CUGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 96028 0.68 0.569948
Target:  5'- aCCGG-CgGGGCG--GGCGGGCGgGCg -3'
miRNA:   3'- gGGCCgGgCCUGCagCCGCCUGUgCG- -5'
5395 5' -62.9 NC_001798.1 + 22398 0.68 0.579366
Target:  5'- cCCCGGCgagCCgGGGCG-CGGCGG-CGucgauCGCu -3'
miRNA:   3'- -GGGCCG---GG-CCUGCaGCCGCCuGU-----GCG- -5'
5395 5' -62.9 NC_001798.1 + 150563 0.68 0.579366
Target:  5'- -gCGGCCCGGggcccGCGg-GGCGG-CGCGg -3'
miRNA:   3'- ggGCCGGGCC-----UGCagCCGCCuGUGCg -5'
5395 5' -62.9 NC_001798.1 + 32371 0.68 0.579366
Target:  5'- cCCCGaGCCCGGggcccGCGaccCGGCGcccggccuCACGCg -3'
miRNA:   3'- -GGGC-CGGGCC-----UGCa--GCCGCcu------GUGCG- -5'
5395 5' -62.9 NC_001798.1 + 1814 0.68 0.579366
Target:  5'- gCCgCGaGaCCaCGGGCccGUCGGCGGGCcaguccgcgGCGCg -3'
miRNA:   3'- -GG-GC-C-GG-GCCUG--CAGCCGCCUG---------UGCG- -5'
5395 5' -62.9 NC_001798.1 + 2421 0.68 0.579366
Target:  5'- gCCGGCguguggCUGGGCccCGGCGG-CugGCg -3'
miRNA:   3'- gGGCCG------GGCCUGcaGCCGCCuGugCG- -5'
5395 5' -62.9 NC_001798.1 + 70208 0.68 0.569948
Target:  5'- gCCGGCCgcccucccccuCGaGCGagcCGGCGGGCAgCGCg -3'
miRNA:   3'- gGGCCGG-----------GCcUGCa--GCCGCCUGU-GCG- -5'
5395 5' -62.9 NC_001798.1 + 22969 0.68 0.569948
Target:  5'- cCCCGGCguCCGGGgaggcCGUCGacgagccugccGCGGACgGCGUc -3'
miRNA:   3'- -GGGCCG--GGCCU-----GCAGC-----------CGCCUG-UGCG- -5'
5395 5' -62.9 NC_001798.1 + 81419 0.68 0.560567
Target:  5'- uCCaCGGCCUGGaggagcugGCGUccgacgacgcCGGCGGcccCACGCc -3'
miRNA:   3'- -GG-GCCGGGCC--------UGCA----------GCCGCCu--GUGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.