miRNA display CGI


Results 1 - 20 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5395 5' -62.9 NC_001798.1 + 71968 0.85 0.050139
Target:  5'- gCUGGCCCuGGugGUCGG-GGACGCGCu -3'
miRNA:   3'- gGGCCGGG-CCugCAGCCgCCUGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 59674 0.84 0.056872
Target:  5'- aCUCGGCUCGcGugGgggCGGCGGGCACGCc -3'
miRNA:   3'- -GGGCCGGGC-CugCa--GCCGCCUGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 147211 0.83 0.071259
Target:  5'- gUCCGGCCCGGGCcccCGGCGGA-GCGCg -3'
miRNA:   3'- -GGGCCGGGCCUGca-GCCGCCUgUGCG- -5'
5395 5' -62.9 NC_001798.1 + 15373 0.8 0.105857
Target:  5'- aUCGGCCgUGGGCG-CGGCGGAgGCGCc -3'
miRNA:   3'- gGGCCGG-GCCUGCaGCCGCCUgUGCG- -5'
5395 5' -62.9 NC_001798.1 + 57723 0.8 0.11089
Target:  5'- cCCCGGCCCccgcgaaGGAC--CGGUGGGCGCGCc -3'
miRNA:   3'- -GGGCCGGG-------CCUGcaGCCGCCUGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 86841 0.79 0.116429
Target:  5'- uCCCGGCCCGGGCccggccgcgacaaGacccggCGGCGGuCGCGCu -3'
miRNA:   3'- -GGGCCGGGCCUG-------------Ca-----GCCGCCuGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 23620 0.79 0.119585
Target:  5'- cCCCGGCCCGGACccccgCGGC-GAC-CGCg -3'
miRNA:   3'- -GGGCCGGGCCUGca---GCCGcCUGuGCG- -5'
5395 5' -62.9 NC_001798.1 + 28741 0.79 0.119585
Target:  5'- gCCCGaGCCCGGGCccacgaagaCGGCGGACcCGCg -3'
miRNA:   3'- -GGGC-CGGGCCUGca-------GCCGCCUGuGCG- -5'
5395 5' -62.9 NC_001798.1 + 92595 0.79 0.126748
Target:  5'- cCCCGGCCCugcgaccuaaagcacGaGACGaCGGgGGACGCGCu -3'
miRNA:   3'- -GGGCCGGG---------------C-CUGCaGCCgCCUGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 5914 0.79 0.1286
Target:  5'- gCgGGCCCGGACGgggGGCGGGCcguuccucGCGCa -3'
miRNA:   3'- gGgCCGGGCCUGCag-CCGCCUG--------UGCG- -5'
5395 5' -62.9 NC_001798.1 + 68988 0.79 0.134954
Target:  5'- gUgGGCCCGGACcgccUCGGCGGcgucGCGCGCa -3'
miRNA:   3'- gGgCCGGGCCUGc---AGCCGCC----UGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 74389 0.79 0.134954
Target:  5'- cUCCGGCCCGGgggccgugGCGcCGGCGGACcugacCGCc -3'
miRNA:   3'- -GGGCCGGGCC--------UGCaGCCGCCUGu----GCG- -5'
5395 5' -62.9 NC_001798.1 + 116185 0.79 0.134954
Target:  5'- gCCgGGCCCGGAgcUgGGCGGGCAgGCu -3'
miRNA:   3'- -GGgCCGGGCCUgcAgCCGCCUGUgCG- -5'
5395 5' -62.9 NC_001798.1 + 17959 0.78 0.137907
Target:  5'- aCCCguucgcaGGUCCGGACGUCGGgGGGgGCuGCg -3'
miRNA:   3'- -GGG-------CCGGGCCUGCAGCCgCCUgUG-CG- -5'
5395 5' -62.9 NC_001798.1 + 153227 0.78 0.145029
Target:  5'- -aCGGCCCGGGCccgcggCGGCGGAggaccCGCGCg -3'
miRNA:   3'- ggGCCGGGCCUGca----GCCGCCU-----GUGCG- -5'
5395 5' -62.9 NC_001798.1 + 149235 0.78 0.148538
Target:  5'- cCCCguGGCCCgcggGGGCGUCGccggccggcGCGGGCGCGCc -3'
miRNA:   3'- -GGG--CCGGG----CCUGCAGC---------CGCCUGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 15278 0.78 0.148538
Target:  5'- cCCCGGguUCCGGGCGU-GGCGGugGuCGCg -3'
miRNA:   3'- -GGGCC--GGGCCUGCAgCCGCCugU-GCG- -5'
5395 5' -62.9 NC_001798.1 + 47859 0.77 0.163355
Target:  5'- cCCCgggGGCCCcguGGGCGcCGGCGGGCGCucGCa -3'
miRNA:   3'- -GGG---CCGGG---CCUGCaGCCGCCUGUG--CG- -5'
5395 5' -62.9 NC_001798.1 + 62271 0.77 0.163355
Target:  5'- uCCCaGGCCCgccGGGCGgccCGGCGGgaGCGCGCc -3'
miRNA:   3'- -GGG-CCGGG---CCUGCa--GCCGCC--UGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 45277 0.77 0.167261
Target:  5'- --gGGCCgCGGACaaGUCGGCGGACGUGCu -3'
miRNA:   3'- gggCCGG-GCCUG--CAGCCGCCUGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.