miRNA display CGI


Results 21 - 40 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5395 5' -62.9 NC_001798.1 + 108832 0.77 0.167261
Target:  5'- aCgUGGCCCguGGGCGUCuggacgacgGGCGGGCugGCg -3'
miRNA:   3'- -GgGCCGGG--CCUGCAG---------CCGCCUGugCG- -5'
5395 5' -62.9 NC_001798.1 + 150907 0.76 0.188073
Target:  5'- cCCCGcGCCgGGGCGcucuUCGGgGGGCGgGCg -3'
miRNA:   3'- -GGGC-CGGgCCUGC----AGCCgCCUGUgCG- -5'
5395 5' -62.9 NC_001798.1 + 52502 0.76 0.206332
Target:  5'- gCCGGCgCagGGACGacgCGGCGGcCGCGCg -3'
miRNA:   3'- gGGCCG-Gg-CCUGCa--GCCGCCuGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 3198 0.76 0.206332
Target:  5'- cCCCGGCCgGcGCGgaGGCGGGCGCGg -3'
miRNA:   3'- -GGGCCGGgCcUGCagCCGCCUGUGCg -5'
5395 5' -62.9 NC_001798.1 + 64861 0.75 0.219508
Target:  5'- gCCGGCCCGGACaugcugcgcuuaaagUGGCugaagGGACGCGCc -3'
miRNA:   3'- gGGCCGGGCCUGca-------------GCCG-----CCUGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 34998 0.75 0.226105
Target:  5'- cUCCGGCCgGGGCGcaccUCGGCGGcCAaGCc -3'
miRNA:   3'- -GGGCCGGgCCUGC----AGCCGCCuGUgCG- -5'
5395 5' -62.9 NC_001798.1 + 133015 0.75 0.226105
Target:  5'- cUCCGG-CCGGACGUCgcgccggccgaGGUGGuCGCGCu -3'
miRNA:   3'- -GGGCCgGGCCUGCAG-----------CCGCCuGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 28616 0.75 0.231292
Target:  5'- gCCUGGCCC-GACGggGGUccuGGGCGCGCg -3'
miRNA:   3'- -GGGCCGGGcCUGCagCCG---CCUGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 25079 0.75 0.23658
Target:  5'- cCCCGGCCaGGGCGcCGcCGGGCgGCGCc -3'
miRNA:   3'- -GGGCCGGgCCUGCaGCcGCCUG-UGCG- -5'
5395 5' -62.9 NC_001798.1 + 4109 0.75 0.23658
Target:  5'- gCUCGGCCCuGGGCGggcUCGGCcgGGGCGcCGCc -3'
miRNA:   3'- -GGGCCGGG-CCUGC---AGCCG--CCUGU-GCG- -5'
5395 5' -62.9 NC_001798.1 + 1971 0.75 0.241969
Target:  5'- gCCCaGCgCCGaGACGUCGG-GGGCGCGg -3'
miRNA:   3'- -GGGcCG-GGC-CUGCAGCCgCCUGUGCg -5'
5395 5' -62.9 NC_001798.1 + 15552 0.75 0.244153
Target:  5'- gCCCGGcCCCGGGCGUugccgccgccgCGGCGGGgaguggcgacgacucCACGg -3'
miRNA:   3'- -GGGCC-GGGCCUGCA-----------GCCGCCU---------------GUGCg -5'
5395 5' -62.9 NC_001798.1 + 126029 0.74 0.24746
Target:  5'- uCCCGcgcuuagcgagcGCCUGGACG-CGGCGGACGauCGUc -3'
miRNA:   3'- -GGGC------------CGGGCCUGCaGCCGCCUGU--GCG- -5'
5395 5' -62.9 NC_001798.1 + 110317 0.74 0.258751
Target:  5'- cCCCGGCCgGGGaggucaUGUCGGUgcugcugguGGACACGg -3'
miRNA:   3'- -GGGCCGGgCCU------GCAGCCG---------CCUGUGCg -5'
5395 5' -62.9 NC_001798.1 + 31668 0.74 0.258751
Target:  5'- gCCgGGCCCGcgccgcccGcCGUgcCGGUGGACGCGCa -3'
miRNA:   3'- -GGgCCGGGC--------CuGCA--GCCGCCUGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 111757 0.74 0.264552
Target:  5'- cCCCGGuCCCGGcCaUCGGuUGGGgGCGCg -3'
miRNA:   3'- -GGGCC-GGGCCuGcAGCC-GCCUgUGCG- -5'
5395 5' -62.9 NC_001798.1 + 66779 0.74 0.27647
Target:  5'- gUgGGCCgCGGAaucggaGUCGGCcGACGCGCg -3'
miRNA:   3'- gGgCCGG-GCCUg-----CAGCCGcCUGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 109669 0.74 0.27647
Target:  5'- gCCaCGGCcguccuCCGGGCGccguuccUGGCGGGCGCGCc -3'
miRNA:   3'- -GG-GCCG------GGCCUGCa------GCCGCCUGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 35028 0.74 0.27647
Target:  5'- cCCCGGCCCgcccGGGgGUCcccgaggcaagaGGCGGACccucggagGCGCg -3'
miRNA:   3'- -GGGCCGGG----CCUgCAG------------CCGCCUG--------UGCG- -5'
5395 5' -62.9 NC_001798.1 + 83885 0.73 0.282589
Target:  5'- cCCCGGCCCGGGCGcucCGGaaGAguggUGCGCc -3'
miRNA:   3'- -GGGCCGGGCCUGCa--GCCgcCU----GUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.