miRNA display CGI


Results 41 - 60 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5395 5' -62.9 NC_001798.1 + 83885 0.73 0.282589
Target:  5'- cCCCGGCCCGGGCGcucCGGaaGAguggUGCGCc -3'
miRNA:   3'- -GGGCCGGGCCUGCa--GCCgcCU----GUGCG- -5'
5395 5' -62.9 NC_001798.1 + 29960 0.73 0.288186
Target:  5'- cCCCGGCCCGcuuaaGCgGUCGGgGGACccccgugggccguGCGCc -3'
miRNA:   3'- -GGGCCGGGCc----UG-CAGCCgCCUG-------------UGCG- -5'
5395 5' -62.9 NC_001798.1 + 4193 0.73 0.288814
Target:  5'- uCCC-GCCCGcGGCGUggucugcggcgcUGGCGGGgGCGCg -3'
miRNA:   3'- -GGGcCGGGC-CUGCA------------GCCGCCUgUGCG- -5'
5395 5' -62.9 NC_001798.1 + 79288 0.73 0.288814
Target:  5'- aCCUGGCCCcGugGgCGGUggaggaguuccgGGGCGCGCg -3'
miRNA:   3'- -GGGCCGGGcCugCaGCCG------------CCUGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 131337 0.73 0.295146
Target:  5'- gCCCGcGCCCcgggcgcGACGUCGGCGcccGGCGCGg -3'
miRNA:   3'- -GGGC-CGGGc------CUGCAGCCGC---CUGUGCg -5'
5395 5' -62.9 NC_001798.1 + 62436 0.73 0.295146
Target:  5'- cUCCaGCCCccGGACGUcgcCGGUGGGcCGCGCg -3'
miRNA:   3'- -GGGcCGGG--CCUGCA---GCCGCCU-GUGCG- -5'
5395 5' -62.9 NC_001798.1 + 29777 0.73 0.301586
Target:  5'- cCCCGGCCCGGcACGagcUCccgGGCGGACccCGg -3'
miRNA:   3'- -GGGCCGGGCC-UGC---AG---CCGCCUGu-GCg -5'
5395 5' -62.9 NC_001798.1 + 26356 0.73 0.307474
Target:  5'- -gCGGCCCGGcggagcugcGCGggccgCGGCGGgaguucuGCGCGCg -3'
miRNA:   3'- ggGCCGGGCC---------UGCa----GCCGCC-------UGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 93144 0.73 0.308134
Target:  5'- gCCUGGCCuCGG-UGaUGGCGGGCgACGCc -3'
miRNA:   3'- -GGGCCGG-GCCuGCaGCCGCCUG-UGCG- -5'
5395 5' -62.9 NC_001798.1 + 66827 0.73 0.308134
Target:  5'- gCCCGGCCCGG-UGcCGGCGccCAgGCc -3'
miRNA:   3'- -GGGCCGGGCCuGCaGCCGCcuGUgCG- -5'
5395 5' -62.9 NC_001798.1 + 96559 0.73 0.308134
Target:  5'- aUCCGGCUgCaGACGUaCGGCGGGgACGUc -3'
miRNA:   3'- -GGGCCGG-GcCUGCA-GCCGCCUgUGCG- -5'
5395 5' -62.9 NC_001798.1 + 75466 0.73 0.308134
Target:  5'- gCCGGCCCGGcCG-CGGCccugcuGGACuucacccuGCGCa -3'
miRNA:   3'- gGGCCGGGCCuGCaGCCG------CCUG--------UGCG- -5'
5395 5' -62.9 NC_001798.1 + 2221 0.73 0.317482
Target:  5'- gCgGGCCCGaGGCgcgcagcgggccgaaGgCGGCGGGCGCGCc -3'
miRNA:   3'- gGgCCGGGC-CUG---------------CaGCCGCCUGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 25726 0.72 0.321553
Target:  5'- aCCGGCgCCcccGACGucUCGGCgcuGGGCGCGCa -3'
miRNA:   3'- gGGCCG-GGc--CUGC--AGCCG---CCUGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 1519 0.72 0.321553
Target:  5'- gCCCGGCcguccagcgCCGGgagcACGgcgCGGCGGuacuCGCGCg -3'
miRNA:   3'- -GGGCCG---------GGCC----UGCa--GCCGCCu---GUGCG- -5'
5395 5' -62.9 NC_001798.1 + 2006 0.72 0.321553
Target:  5'- gCCC-GCCCaGGCGgccgUGGCGGGCcCGCa -3'
miRNA:   3'- -GGGcCGGGcCUGCa---GCCGCCUGuGCG- -5'
5395 5' -62.9 NC_001798.1 + 153029 0.72 0.321553
Target:  5'- uCCgGGCCC--GCG-CGGCGG-CGCGCg -3'
miRNA:   3'- -GGgCCGGGccUGCaGCCGCCuGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 23870 0.72 0.328425
Target:  5'- cCCCGGCCUcugggGGGCGcccgaGGCGGAggagGCGCg -3'
miRNA:   3'- -GGGCCGGG-----CCUGCag---CCGCCUg---UGCG- -5'
5395 5' -62.9 NC_001798.1 + 26185 0.72 0.328425
Target:  5'- uCCCGGCgCUGGACGgcCGGgccgccgccuCGGGCGCGg -3'
miRNA:   3'- -GGGCCG-GGCCUGCa-GCC----------GCCUGUGCg -5'
5395 5' -62.9 NC_001798.1 + 154178 0.72 0.334702
Target:  5'- gCCCGGagCCGGagcGCGUCggGGCGGgagaguucacucgGCACGCa -3'
miRNA:   3'- -GGGCCg-GGCC---UGCAG--CCGCC-------------UGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.