miRNA display CGI


Results 61 - 80 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5395 5' -62.9 NC_001798.1 + 77790 0.72 0.335405
Target:  5'- gCC-GCCUGcaGGCGcUGGCGGGCACGCa -3'
miRNA:   3'- gGGcCGGGC--CUGCaGCCGCCUGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 34840 0.72 0.335405
Target:  5'- gCCCGGgCCGGACcgccgggCGGgGGACGCc- -3'
miRNA:   3'- -GGGCCgGGCCUGca-----GCCgCCUGUGcg -5'
5395 5' -62.9 NC_001798.1 + 60965 0.72 0.340355
Target:  5'- aCCgGGCCCGGAggcgcggccguuugUGUCgcaggcggagggGGCGGAUgACGCg -3'
miRNA:   3'- -GGgCCGGGCCU--------------GCAG------------CCGCCUG-UGCG- -5'
5395 5' -62.9 NC_001798.1 + 36494 0.72 0.341779
Target:  5'- gCCGGCgcgacgcgggcggCCGGGCGggggcgcgCGGCGGccgggcggggGCGCGCg -3'
miRNA:   3'- gGGCCG-------------GGCCUGCa-------GCCGCC----------UGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 111813 0.72 0.342492
Target:  5'- gCCGGUCgCGGGCGUCcaggGGCuGGCGCGg -3'
miRNA:   3'- gGGCCGG-GCCUGCAG----CCGcCUGUGCg -5'
5395 5' -62.9 NC_001798.1 + 22678 0.72 0.342492
Target:  5'- cCCCGGUCgGaggcGAUGUCGGCGGAgCA-GCg -3'
miRNA:   3'- -GGGCCGGgC----CUGCAGCCGCCU-GUgCG- -5'
5395 5' -62.9 NC_001798.1 + 51706 0.72 0.342492
Target:  5'- gCUGGCCUGGuACGUCa-CGGGCgACGCg -3'
miRNA:   3'- gGGCCGGGCC-UGCAGccGCCUG-UGCG- -5'
5395 5' -62.9 NC_001798.1 + 24554 0.72 0.342492
Target:  5'- gCCGGCggUGGugG-CGGCGGccgGCGCGCg -3'
miRNA:   3'- gGGCCGg-GCCugCaGCCGCC---UGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 2515 0.72 0.342492
Target:  5'- -gCGGCCgCGGcggcgGCGUCGGCgGGGCgggggGCGCg -3'
miRNA:   3'- ggGCCGG-GCC-----UGCAGCCG-CCUG-----UGCG- -5'
5395 5' -62.9 NC_001798.1 + 58981 0.72 0.342492
Target:  5'- gUCGGCggCCGGGCGaacgCGGgGGGgGCGCg -3'
miRNA:   3'- gGGCCG--GGCCUGCa---GCCgCCUgUGCG- -5'
5395 5' -62.9 NC_001798.1 + 61072 0.72 0.349687
Target:  5'- aCCCGaGCCaaGGACuaCGGCGGACcCGCc -3'
miRNA:   3'- -GGGC-CGGg-CCUGcaGCCGCCUGuGCG- -5'
5395 5' -62.9 NC_001798.1 + 32034 0.72 0.356254
Target:  5'- aCCgCGGCCaCGGgccgcucgccccgGCGUCcGCGGGCGcCGCg -3'
miRNA:   3'- -GG-GCCGG-GCC-------------UGCAGcCGCCUGU-GCG- -5'
5395 5' -62.9 NC_001798.1 + 53242 0.72 0.356989
Target:  5'- gCgCGGCCgUGGGCGUCcuGCGGcaGCGCGCc -3'
miRNA:   3'- -GgGCCGG-GCCUGCAGc-CGCC--UGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 8856 0.72 0.356989
Target:  5'- gCgGGCCgGGAgGUCaucGCGGACGCGg -3'
miRNA:   3'- gGgCCGGgCCUgCAGc--CGCCUGUGCg -5'
5395 5' -62.9 NC_001798.1 + 135258 0.72 0.356989
Target:  5'- gCgGGCCUGGAaa--GGCuGGACGCGCu -3'
miRNA:   3'- gGgCCGGGCCUgcagCCG-CCUGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 52233 0.72 0.356989
Target:  5'- -gUGGCUcuCGGugGUCGuGgGGGCGCGCc -3'
miRNA:   3'- ggGCCGG--GCCugCAGC-CgCCUGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 74763 0.72 0.363652
Target:  5'- cCUCGGcCCCGGACGccgCGGCcucGGguccaccGCACGCc -3'
miRNA:   3'- -GGGCC-GGGCCUGCa--GCCG---CC-------UGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 26464 0.72 0.363652
Target:  5'- gCCC-GCCCccgcagauacgcuGGGCGUCGGCcgcGGGcCGCGCg -3'
miRNA:   3'- -GGGcCGGG-------------CCUGCAGCCG---CCU-GUGCG- -5'
5395 5' -62.9 NC_001798.1 + 78837 0.72 0.363652
Target:  5'- cCCCGGCCCcuGGCG-CGGCacgccggccgccuGGGgGCGCu -3'
miRNA:   3'- -GGGCCGGGc-CUGCaGCCG-------------CCUgUGCG- -5'
5395 5' -62.9 NC_001798.1 + 2991 0.72 0.364398
Target:  5'- gCCGGCCCgcgggccccGGGCG-CGG-GGGCGCGg -3'
miRNA:   3'- gGGCCGGG---------CCUGCaGCCgCCUGUGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.