miRNA display CGI


Results 81 - 100 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5395 5' -62.9 NC_001798.1 + 43105 0.71 0.371912
Target:  5'- gUCCGcGaCCaCGGuCGcuucCGGCGGGCGCGCg -3'
miRNA:   3'- -GGGC-C-GG-GCCuGCa---GCCGCCUGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 96971 0.71 0.371912
Target:  5'- gCUGGCgCGGAcCG-CGGCGGGCG-GCg -3'
miRNA:   3'- gGGCCGgGCCU-GCaGCCGCCUGUgCG- -5'
5395 5' -62.9 NC_001798.1 + 127343 0.71 0.371912
Target:  5'- cCCCGaGCCUGGGCGUCccCGuGACcCGCg -3'
miRNA:   3'- -GGGC-CGGGCCUGCAGccGC-CUGuGCG- -5'
5395 5' -62.9 NC_001798.1 + 23817 0.71 0.37953
Target:  5'- gCCGGCCCcccgcccccgGGGCGcgugcuguaCGGCGGGCugGg -3'
miRNA:   3'- gGGCCGGG----------CCUGCa--------GCCGCCUGugCg -5'
5395 5' -62.9 NC_001798.1 + 24708 0.71 0.37953
Target:  5'- cCCCGcGCCCGGG-GcCcGCGGGCGCGg -3'
miRNA:   3'- -GGGC-CGGGCCUgCaGcCGCCUGUGCg -5'
5395 5' -62.9 NC_001798.1 + 81024 0.71 0.37953
Target:  5'- cCCCGGCCCcccuGACGUgCGGUuuguGGGCA-GCg -3'
miRNA:   3'- -GGGCCGGGc---CUGCA-GCCG----CCUGUgCG- -5'
5395 5' -62.9 NC_001798.1 + 89685 0.71 0.387253
Target:  5'- gCgGGCCCGGagGCGUaguaGGCGGGgAUGUc -3'
miRNA:   3'- gGgCCGGGCC--UGCAg---CCGCCUgUGCG- -5'
5395 5' -62.9 NC_001798.1 + 73696 0.71 0.394291
Target:  5'- gCCCGGCCCauaaacaGGccccgcuCGU-GGCGGGCGCGg -3'
miRNA:   3'- -GGGCCGGG-------CCu------GCAgCCGCCUGUGCg -5'
5395 5' -62.9 NC_001798.1 + 2814 0.71 0.395078
Target:  5'- gCCgGGCCCaGGGCccCGGCGaccaggcucacGGCGCGCa -3'
miRNA:   3'- -GGgCCGGG-CCUGcaGCCGC-----------CUGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 35560 0.71 0.400616
Target:  5'- gCCCGGCCCGGccccggagcccgcgGCGcugcUCGGCuGcGGC-CGCg -3'
miRNA:   3'- -GGGCCGGGCC--------------UGC----AGCCG-C-CUGuGCG- -5'
5395 5' -62.9 NC_001798.1 + 29406 0.71 0.400616
Target:  5'- gCCGGCggggcgCCGGggggacucccaucuGCGUCGGCGGggggcggcGCAUGCu -3'
miRNA:   3'- gGGCCG------GGCC--------------UGCAGCCGCC--------UGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 31143 0.71 0.403005
Target:  5'- cCCCGGCgCGGGgG-CGGCGG-UGCGg -3'
miRNA:   3'- -GGGCCGgGCCUgCaGCCGCCuGUGCg -5'
5395 5' -62.9 NC_001798.1 + 75993 0.71 0.403005
Target:  5'- gCCGcCCCGGGCGcCGGCGG-CAgGg -3'
miRNA:   3'- gGGCcGGGCCUGCaGCCGCCuGUgCg -5'
5395 5' -62.9 NC_001798.1 + 1698 0.71 0.403005
Target:  5'- cCCCGGCCCGaacACG-CGGCcGGAgGCcaGCa -3'
miRNA:   3'- -GGGCCGGGCc--UGCaGCCG-CCUgUG--CG- -5'
5395 5' -62.9 NC_001798.1 + 36567 0.71 0.403005
Target:  5'- gCgCGGCggCCGGGCGggggcgcgCGGCGGccgggcggggGCGCGCg -3'
miRNA:   3'- -GgGCCG--GGCCUGCa-------GCCGCC----------UGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 80385 0.71 0.403005
Target:  5'- gUCCGGCCCaGGCccuggCGGCGGugAgCGUc -3'
miRNA:   3'- -GGGCCGGGcCUGca---GCCGCCugU-GCG- -5'
5395 5' -62.9 NC_001798.1 + 44596 0.71 0.403005
Target:  5'- gCCCGGCUCcccuCGaaccucuccuguUCGGUGGGCGCGCc -3'
miRNA:   3'- -GGGCCGGGccu-GC------------AGCCGCCUGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 64721 0.71 0.403005
Target:  5'- aUCUGGgCCGaGGCGgCGGUGGGCaugaGCGCg -3'
miRNA:   3'- -GGGCCgGGC-CUGCaGCCGCCUG----UGCG- -5'
5395 5' -62.9 NC_001798.1 + 33252 0.71 0.406204
Target:  5'- gCCCGGCCuCGuucuGGCucccugucuugguggGUgGGCGGGCugGCu -3'
miRNA:   3'- -GGGCCGG-GC----CUG---------------CAgCCGCCUGugCG- -5'
5395 5' -62.9 NC_001798.1 + 109202 0.71 0.411032
Target:  5'- --aGGaCCCGGGCucCGGCacGGACGCGCg -3'
miRNA:   3'- gggCC-GGGCCUGcaGCCG--CCUGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.