miRNA display CGI


Results 101 - 120 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5395 5' -62.9 NC_001798.1 + 109202 0.71 0.411032
Target:  5'- --aGGaCCCGGGCucCGGCacGGACGCGCg -3'
miRNA:   3'- gggCC-GGGCCUGcaGCCG--CCUGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 83531 0.7 0.418341
Target:  5'- gCCCGcgcaugccgagcGCCCGGACGuugUCGGCGGuaaugguGCugGg -3'
miRNA:   3'- -GGGC------------CGGGCCUGC---AGCCGCC-------UGugCg -5'
5395 5' -62.9 NC_001798.1 + 73330 0.7 0.419157
Target:  5'- gCCCGcGCgCCGucGACGcgccCGGCGGGC-CGCg -3'
miRNA:   3'- -GGGC-CG-GGC--CUGCa---GCCGCCUGuGCG- -5'
5395 5' -62.9 NC_001798.1 + 118993 0.7 0.419157
Target:  5'- cCCUGGCCCGcGAgauaGUCGcGCGG-CugGUc -3'
miRNA:   3'- -GGGCCGGGC-CUg---CAGC-CGCCuGugCG- -5'
5395 5' -62.9 NC_001798.1 + 48156 0.7 0.427379
Target:  5'- gCCGcGgUCGGGCGcCuGGCGGcCACGCa -3'
miRNA:   3'- gGGC-CgGGCCUGCaG-CCGCCuGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 147175 0.7 0.427379
Target:  5'- gCCCGGCgCCGGGCGgaaGGCGucCccCGCc -3'
miRNA:   3'- -GGGCCG-GGCCUGCag-CCGCcuGu-GCG- -5'
5395 5' -62.9 NC_001798.1 + 67614 0.7 0.427379
Target:  5'- aCCGcGCuCCGG-CGagGGCGGAUGCGg -3'
miRNA:   3'- gGGC-CG-GGCCuGCagCCGCCUGUGCg -5'
5395 5' -62.9 NC_001798.1 + 43828 0.7 0.427379
Target:  5'- gCCGGUCuCGcGuACGUCGGCGGcgauGCgGCGCu -3'
miRNA:   3'- gGGCCGG-GC-C-UGCAGCCGCC----UG-UGCG- -5'
5395 5' -62.9 NC_001798.1 + 12260 0.7 0.427379
Target:  5'- --gGGCCgCGGACGaccaGGcCGGugGCGCa -3'
miRNA:   3'- gggCCGG-GCCUGCag--CC-GCCugUGCG- -5'
5395 5' -62.9 NC_001798.1 + 12698 0.7 0.427379
Target:  5'- --aGGCCCGGGuugcUGggggCGGCGGGgGCGUg -3'
miRNA:   3'- gggCCGGGCCU----GCa---GCCGCCUgUGCG- -5'
5395 5' -62.9 NC_001798.1 + 135305 0.7 0.435696
Target:  5'- gCCCugGGCCCGGGcCGUgcUGGagcgccuggugcCGGACGCGUg -3'
miRNA:   3'- -GGG--CCGGGCCU-GCA--GCC------------GCCUGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 83846 0.7 0.435696
Target:  5'- uCCCcGUCCGGGCGgcgcUGGCGGGCcCGa -3'
miRNA:   3'- -GGGcCGGGCCUGCa---GCCGCCUGuGCg -5'
5395 5' -62.9 NC_001798.1 + 37505 0.7 0.444106
Target:  5'- gCgCGGCCCGcuguGCGUCGaGCuccGACACGCc -3'
miRNA:   3'- -GgGCCGGGCc---UGCAGC-CGc--CUGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 134463 0.7 0.444106
Target:  5'- cCCCGGCgCGcg-GUUGGCguGGGCGCGCc -3'
miRNA:   3'- -GGGCCGgGCcugCAGCCG--CCUGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 137981 0.7 0.444106
Target:  5'- cCCCcGCCUGGGCG-CGccgcagcucGCGGuCGCGCg -3'
miRNA:   3'- -GGGcCGGGCCUGCaGC---------CGCCuGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 143809 0.7 0.444106
Target:  5'- aCCaGGCCCGGGCGgCGcGCGGcCA-GCc -3'
miRNA:   3'- gGG-CCGGGCCUGCaGC-CGCCuGUgCG- -5'
5395 5' -62.9 NC_001798.1 + 110375 0.7 0.444106
Target:  5'- gCUGGCCCagGGGCcggUGGCGGGCACc- -3'
miRNA:   3'- gGGCCGGG--CCUGca-GCCGCCUGUGcg -5'
5395 5' -62.9 NC_001798.1 + 113338 0.7 0.444106
Target:  5'- aCgGGUggaCCGGACG--GGCGGugGCGCc -3'
miRNA:   3'- gGgCCG---GGCCUGCagCCGCCugUGCG- -5'
5395 5' -62.9 NC_001798.1 + 144731 0.7 0.452605
Target:  5'- aCCCGGCCCuGACGggugcgUGGCuGACG-GCc -3'
miRNA:   3'- -GGGCCGGGcCUGCa-----GCCGcCUGUgCG- -5'
5395 5' -62.9 NC_001798.1 + 51984 0.7 0.452605
Target:  5'- cCCCGGCCCcGACG-CcGCGGuCuuuCGCa -3'
miRNA:   3'- -GGGCCGGGcCUGCaGcCGCCuGu--GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.