Results 21 - 40 of 319 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5395 | 5' | -62.9 | NC_001798.1 | + | 86408 | 0.66 | 0.683834 |
Target: 5'- gCCGGUCgUGGACcagcucgaGGCGGACcccgagGCGCa -3' miRNA: 3'- gGGCCGG-GCCUGcag-----CCGCCUG------UGCG- -5' |
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5395 | 5' | -62.9 | NC_001798.1 | + | 128946 | 0.66 | 0.683834 |
Target: 5'- uUCGcGCCCGGGCGcguuccgggccCGGaGGAgGCGCu -3' miRNA: 3'- gGGC-CGGGCCUGCa----------GCCgCCUgUGCG- -5' |
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5395 | 5' | -62.9 | NC_001798.1 | + | 134153 | 0.66 | 0.683834 |
Target: 5'- uCUCGGCCCccgGGGcCGUCG-CGGccgccCGCGCc -3' miRNA: 3'- -GGGCCGGG---CCU-GCAGCcGCCu----GUGCG- -5' |
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5395 | 5' | -62.9 | NC_001798.1 | + | 16668 | 0.66 | 0.683834 |
Target: 5'- aCCCaagGGCCCGGGauCGUCcaaccGgGGAUAgGCa -3' miRNA: 3'- -GGG---CCGGGCCU--GCAGc----CgCCUGUgCG- -5' |
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5395 | 5' | -62.9 | NC_001798.1 | + | 68089 | 0.66 | 0.683834 |
Target: 5'- aCCUGGCUuuauugagaCGGACGcaCGG-GGcCGCGCa -3' miRNA: 3'- -GGGCCGG---------GCCUGCa-GCCgCCuGUGCG- -5' |
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5395 | 5' | -62.9 | NC_001798.1 | + | 99309 | 0.66 | 0.683834 |
Target: 5'- -aCGGCacgaCGGucaacugcauCGUCgaggaGGUGGACGCGCg -3' miRNA: 3'- ggGCCGg---GCCu---------GCAG-----CCGCCUGUGCG- -5' |
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5395 | 5' | -62.9 | NC_001798.1 | + | 150367 | 0.66 | 0.683834 |
Target: 5'- aCCGGCacggCGGGCGgcgCGGgccCGGcCGCGUc -3' miRNA: 3'- gGGCCGg---GCCUGCa--GCC---GCCuGUGCG- -5' |
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5395 | 5' | -62.9 | NC_001798.1 | + | 102381 | 0.66 | 0.67817 |
Target: 5'- aCCC-GCCUGG-CgGUCGGCGGcgauggcccccaccaGCGCGg -3' miRNA: 3'- -GGGcCGGGCCuG-CAGCCGCC---------------UGUGCg -5' |
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5395 | 5' | -62.9 | NC_001798.1 | + | 102507 | 0.66 | 0.67817 |
Target: 5'- gCCGGCgCCGGGguguccguaggccacCGUCcccGCGGccggcaggccGCACGCg -3' miRNA: 3'- gGGCCG-GGCCU---------------GCAGc--CGCC----------UGUGCG- -5' |
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5395 | 5' | -62.9 | NC_001798.1 | + | 12026 | 0.66 | 0.674387 |
Target: 5'- gCCaCGG-CgGGGCGgCGG-GGGCAUGCg -3' miRNA: 3'- -GG-GCCgGgCCUGCaGCCgCCUGUGCG- -5' |
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5395 | 5' | -62.9 | NC_001798.1 | + | 93869 | 0.66 | 0.674387 |
Target: 5'- uCUCGGCCCuGAag-CGcGCGGACGgGUc -3' miRNA: 3'- -GGGCCGGGcCUgcaGC-CGCCUGUgCG- -5' |
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5395 | 5' | -62.9 | NC_001798.1 | + | 97832 | 0.66 | 0.674387 |
Target: 5'- uUCUGcGCCCuGACGgCGggcGCGGGCACGg -3' miRNA: 3'- -GGGC-CGGGcCUGCaGC---CGCCUGUGCg -5' |
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5395 | 5' | -62.9 | NC_001798.1 | + | 109103 | 0.66 | 0.674387 |
Target: 5'- gCUCGGCgCUGGACGcccucCGGCgGGugGCcgGCu -3' miRNA: 3'- -GGGCCG-GGCCUGCa----GCCG-CCugUG--CG- -5' |
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5395 | 5' | -62.9 | NC_001798.1 | + | 30750 | 0.66 | 0.674387 |
Target: 5'- cCCCGGaCCCGcGugGaggccgaGGCGGcCGUGCg -3' miRNA: 3'- -GGGCC-GGGC-CugCag-----CCGCCuGUGCG- -5' |
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5395 | 5' | -62.9 | NC_001798.1 | + | 52034 | 0.66 | 0.674387 |
Target: 5'- aCUGGCCCGGgguGCG-CGcGCuccugGGGCGCGa -3' miRNA: 3'- gGGCCGGGCC---UGCaGC-CG-----CCUGUGCg -5' |
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5395 | 5' | -62.9 | NC_001798.1 | + | 79374 | 0.66 | 0.674387 |
Target: 5'- gCCGGCggCCaGACGggcGCGGGCGCGg -3' miRNA: 3'- gGGCCG--GGcCUGCagcCGCCUGUGCg -5' |
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5395 | 5' | -62.9 | NC_001798.1 | + | 27217 | 0.66 | 0.674387 |
Target: 5'- cCCCgGGgCgGGGCG-CGGgGGAgGCGg -3' miRNA: 3'- -GGG-CCgGgCCUGCaGCCgCCUgUGCg -5' |
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5395 | 5' | -62.9 | NC_001798.1 | + | 148905 | 0.66 | 0.674387 |
Target: 5'- cCCCGGCCCcccuGCG-CGGgGGAgcUGCa -3' miRNA: 3'- -GGGCCGGGcc--UGCaGCCgCCUguGCG- -5' |
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5395 | 5' | -62.9 | NC_001798.1 | + | 63713 | 0.66 | 0.67344 |
Target: 5'- -aUGGCCgGGugGUUGaugguGCGGGCcacauagGCGCg -3' miRNA: 3'- ggGCCGGgCCugCAGC-----CGCCUG-------UGCG- -5' |
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5395 | 5' | -62.9 | NC_001798.1 | + | 7057 | 0.66 | 0.67344 |
Target: 5'- cCCCGGCCCacccccaaaccccGGuuGg-GGCGGGCA-GCc -3' miRNA: 3'- -GGGCCGGG-------------CCugCagCCGCCUGUgCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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