miRNA display CGI


Results 81 - 100 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5395 5' -62.9 NC_001798.1 + 93430 0.67 0.617311
Target:  5'- uCUCGuGCCCGGcACGcacgUGGCGGcCAaccCGCa -3'
miRNA:   3'- -GGGC-CGGGCC-UGCa---GCCGCCuGU---GCG- -5'
5395 5' -62.9 NC_001798.1 + 15334 0.67 0.617311
Target:  5'- cCCCGGCgCGGuag-CGGgGGGCGagGCg -3'
miRNA:   3'- -GGGCCGgGCCugcaGCCgCCUGUg-CG- -5'
5395 5' -62.9 NC_001798.1 + 44421 0.67 0.617311
Target:  5'- cCCgCGGCCCaGGGCGUCu-UGGAgCACGg -3'
miRNA:   3'- -GG-GCCGGG-CCUGCAGccGCCU-GUGCg -5'
5395 5' -62.9 NC_001798.1 + 108214 0.67 0.617311
Target:  5'- gUUGGCCCGcACGUacUGGCGcGACACa- -3'
miRNA:   3'- gGGCCGGGCcUGCA--GCCGC-CUGUGcg -5'
5395 5' -62.9 NC_001798.1 + 147053 0.67 0.617311
Target:  5'- cCCCGG-CCGGAgGggcccccgcaccUCGGCGG-C-CGCc -3'
miRNA:   3'- -GGGCCgGGCCUgC------------AGCCGCCuGuGCG- -5'
5395 5' -62.9 NC_001798.1 + 23724 0.67 0.6116
Target:  5'- cCCCGGCgggucgagCUGGACGcCGacGCGGccuccggcgccuucuACGCGCg -3'
miRNA:   3'- -GGGCCG--------GGCCUGCaGC--CGCC---------------UGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 113951 0.67 0.6116
Target:  5'- -gCGGCCCGuGGguuguuagucgcgucCGcCGGCGGugAgGCg -3'
miRNA:   3'- ggGCCGGGC-CU---------------GCaGCCGCCugUgCG- -5'
5395 5' -62.9 NC_001798.1 + 24083 0.67 0.607796
Target:  5'- uUCCGGauCUCGGGCG-CGGCGcGCAacaGCa -3'
miRNA:   3'- -GGGCC--GGGCCUGCaGCCGCcUGUg--CG- -5'
5395 5' -62.9 NC_001798.1 + 28822 0.67 0.607796
Target:  5'- gCgGGCCCGGGcCGUCGgGCGGucuaGgGUu -3'
miRNA:   3'- gGgCCGGGCCU-GCAGC-CGCCug--UgCG- -5'
5395 5' -62.9 NC_001798.1 + 71384 0.67 0.607796
Target:  5'- aUCGGCCCuGGAgGgguuuuuggUGGCGGGggugccCGCGCg -3'
miRNA:   3'- gGGCCGGG-CCUgCa--------GCCGCCU------GUGCG- -5'
5395 5' -62.9 NC_001798.1 + 95019 0.67 0.607796
Target:  5'- gCgGGCCUGGAgGcCGG-GGcccGCGCGCu -3'
miRNA:   3'- gGgCCGGGCCUgCaGCCgCC---UGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 109435 0.67 0.607796
Target:  5'- -gCGGCCCGccUG-CGGCuGGAgGCGCg -3'
miRNA:   3'- ggGCCGGGCcuGCaGCCG-CCUgUGCG- -5'
5395 5' -62.9 NC_001798.1 + 121117 0.67 0.607796
Target:  5'- uUCCGGCaCCGGGaagggcucgcacCGcCGGCcGGGCcaugaACGCg -3'
miRNA:   3'- -GGGCCG-GGCCU------------GCaGCCG-CCUG-----UGCG- -5'
5395 5' -62.9 NC_001798.1 + 141553 0.67 0.607796
Target:  5'- aCCCGGguguucgcguuCgCGGAgGagcugCGGCGGcgGCACGCg -3'
miRNA:   3'- -GGGCC-----------GgGCCUgCa----GCCGCC--UGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 106102 0.67 0.598296
Target:  5'- aCCCGGCgccgcgaccgCCGGgucuGCGguucCGGCGG-CACGg -3'
miRNA:   3'- -GGGCCG----------GGCC----UGCa---GCCGCCuGUGCg -5'
5395 5' -62.9 NC_001798.1 + 111615 0.67 0.598296
Target:  5'- uCCUGGagcCCCGGGgG-CGGCaGACuCGCg -3'
miRNA:   3'- -GGGCC---GGGCCUgCaGCCGcCUGuGCG- -5'
5395 5' -62.9 NC_001798.1 + 9643 0.67 0.598296
Target:  5'- aCCGcCCCGaGGCG-CaGCGGGcCGCGCg -3'
miRNA:   3'- gGGCcGGGC-CUGCaGcCGCCU-GUGCG- -5'
5395 5' -62.9 NC_001798.1 + 30919 0.67 0.595449
Target:  5'- aCCUGGCCgacggugagggcggCGGGgGUCGGgCGGgggGCGgGCg -3'
miRNA:   3'- -GGGCCGG--------------GCCUgCAGCC-GCC---UGUgCG- -5'
5395 5' -62.9 NC_001798.1 + 148418 0.67 0.588817
Target:  5'- gUgGGCgCCGGgGCGggGGUGGGCACGg -3'
miRNA:   3'- gGgCCG-GGCC-UGCagCCGCCUGUGCg -5'
5395 5' -62.9 NC_001798.1 + 122093 0.67 0.588817
Target:  5'- gCgGGCCUGGAgcCGccCGGCGGgGgGCGCu -3'
miRNA:   3'- gGgCCGGGCCU--GCa-GCCGCC-UgUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.