miRNA display CGI


Results 1 - 20 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5395 5' -62.9 NC_001798.1 + 60 0.67 0.636366
Target:  5'- --gGGCgcgaaggCGGGCGgcggCGGCGGGCGgGCg -3'
miRNA:   3'- gggCCGg------GCCUGCa---GCCGCCUGUgCG- -5'
5395 5' -62.9 NC_001798.1 + 1260 0.69 0.496368
Target:  5'- gCCCGcGUCCGcGuCGUCGcgcagcaccaGCGGGgGCGCg -3'
miRNA:   3'- -GGGC-CGGGC-CuGCAGC----------CGCCUgUGCG- -5'
5395 5' -62.9 NC_001798.1 + 1519 0.72 0.321553
Target:  5'- gCCCGGCcguccagcgCCGGgagcACGgcgCGGCGGuacuCGCGCg -3'
miRNA:   3'- -GGGCCG---------GGCC----UGCa--GCCGCCu---GUGCG- -5'
5395 5' -62.9 NC_001798.1 + 1698 0.71 0.403005
Target:  5'- cCCCGGCCCGaacACG-CGGCcGGAgGCcaGCa -3'
miRNA:   3'- -GGGCCGGGCc--UGCaGCCG-CCUgUG--CG- -5'
5395 5' -62.9 NC_001798.1 + 1814 0.68 0.579366
Target:  5'- gCCgCGaGaCCaCGGGCccGUCGGCGGGCcaguccgcgGCGCg -3'
miRNA:   3'- -GG-GC-C-GG-GCCUG--CAGCCGCCUG---------UGCG- -5'
5395 5' -62.9 NC_001798.1 + 1971 0.75 0.241969
Target:  5'- gCCCaGCgCCGaGACGUCGG-GGGCGCGg -3'
miRNA:   3'- -GGGcCG-GGC-CUGCAGCCgCCUGUGCg -5'
5395 5' -62.9 NC_001798.1 + 2006 0.72 0.321553
Target:  5'- gCCC-GCCCaGGCGgccgUGGCGGGCcCGCa -3'
miRNA:   3'- -GGGcCGGGcCUGCa---GCCGCCUGuGCG- -5'
5395 5' -62.9 NC_001798.1 + 2221 0.73 0.317482
Target:  5'- gCgGGCCCGaGGCgcgcagcgggccgaaGgCGGCGGGCGCGCc -3'
miRNA:   3'- gGgCCGGGC-CUG---------------CaGCCGCCUGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 2421 0.68 0.579366
Target:  5'- gCCGGCguguggCUGGGCccCGGCGG-CugGCg -3'
miRNA:   3'- gGGCCG------GGCCUGcaGCCGCCuGugCG- -5'
5395 5' -62.9 NC_001798.1 + 2467 0.66 0.693246
Target:  5'- gCgGGUCgGGGCccUCGGCGGGCcggcgggucaGCGCc -3'
miRNA:   3'- gGgCCGGgCCUGc-AGCCGCCUG----------UGCG- -5'
5395 5' -62.9 NC_001798.1 + 2515 0.72 0.342492
Target:  5'- -gCGGCCgCGGcggcgGCGUCGGCgGGGCgggggGCGCg -3'
miRNA:   3'- ggGCCGG-GCC-----UGCAGCCG-CCUG-----UGCG- -5'
5395 5' -62.9 NC_001798.1 + 2635 0.66 0.693246
Target:  5'- cCCUGGCCgGGGCGg-GGCucuugcgcuuGCGCGCc -3'
miRNA:   3'- -GGGCCGGgCCUGCagCCGcc--------UGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 2671 0.67 0.626837
Target:  5'- cCCgCGGCgCGGA----GGCGGGCGCGg -3'
miRNA:   3'- -GG-GCCGgGCCUgcagCCGCCUGUGCg -5'
5395 5' -62.9 NC_001798.1 + 2702 0.66 0.655409
Target:  5'- gUCGGCCgCGGcgacggUGUCGGCcagcaGGGgGCGCa -3'
miRNA:   3'- gGGCCGG-GCCu-----GCAGCCG-----CCUgUGCG- -5'
5395 5' -62.9 NC_001798.1 + 2814 0.71 0.395078
Target:  5'- gCCgGGCCCaGGGCccCGGCGaccaggcucacGGCGCGCa -3'
miRNA:   3'- -GGgCCGGG-CCUGcaGCCGC-----------CUGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 2991 0.72 0.364398
Target:  5'- gCCGGCCCgcgggccccGGGCG-CGG-GGGCGCGg -3'
miRNA:   3'- gGGCCGGG---------CCUGCaGCCgCCUGUGCg -5'
5395 5' -62.9 NC_001798.1 + 3198 0.76 0.206332
Target:  5'- cCCCGGCCgGcGCGgaGGCGGGCGCGg -3'
miRNA:   3'- -GGGCCGGgCcUGCagCCGCCUGUGCg -5'
5395 5' -62.9 NC_001798.1 + 3254 0.69 0.505352
Target:  5'- cCCgCGGCgCCGua-GcCGGCGGGCACcGCg -3'
miRNA:   3'- -GG-GCCG-GGCcugCaGCCGCCUGUG-CG- -5'
5395 5' -62.9 NC_001798.1 + 3312 0.66 0.664909
Target:  5'- -aCGGCaaCgGGGCGgcggcggCGGCGGGCuuccCGCg -3'
miRNA:   3'- ggGCCG--GgCCUGCa------GCCGCCUGu---GCG- -5'
5395 5' -62.9 NC_001798.1 + 4017 0.69 0.514405
Target:  5'- -gCGGCCCGuGGCGUCG-CGGccggccaccgcCGCGCg -3'
miRNA:   3'- ggGCCGGGC-CUGCAGCcGCCu----------GUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.