miRNA display CGI


Results 41 - 60 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5395 5' -62.9 NC_001798.1 + 16668 0.66 0.683834
Target:  5'- aCCCaagGGCCCGGGauCGUCcaaccGgGGAUAgGCa -3'
miRNA:   3'- -GGG---CCGGGCCU--GCAGc----CgCCUGUgCG- -5'
5395 5' -62.9 NC_001798.1 + 17115 0.66 0.693246
Target:  5'- uCCCGGCCgcccgcgagCGGuaguGCG-CGGUGaGGCGCGa -3'
miRNA:   3'- -GGGCCGG---------GCC----UGCaGCCGC-CUGUGCg -5'
5395 5' -62.9 NC_001798.1 + 17337 0.69 0.487457
Target:  5'- cCCCGGCCaGGACcUCGG-GGGCGuuUGUa -3'
miRNA:   3'- -GGGCCGGgCCUGcAGCCgCCUGU--GCG- -5'
5395 5' -62.9 NC_001798.1 + 17959 0.78 0.137907
Target:  5'- aCCCguucgcaGGUCCGGACGUCGGgGGGgGCuGCg -3'
miRNA:   3'- -GGG-------CCGGGCCUGCAGCCgCCUgUG-CG- -5'
5395 5' -62.9 NC_001798.1 + 19849 0.68 0.564315
Target:  5'- -aCGcGCCCGGggcggguaggccagaGCGuUCGGCGGAgCugGUa -3'
miRNA:   3'- ggGC-CGGGCC---------------UGC-AGCCGCCU-GugCG- -5'
5395 5' -62.9 NC_001798.1 + 20014 0.69 0.473359
Target:  5'- gCCGGCCgGGGagggcccccccuccgUGUCGGaaugGGACGCGa -3'
miRNA:   3'- gGGCCGGgCCU---------------GCAGCCg---CCUGUGCg -5'
5395 5' -62.9 NC_001798.1 + 20353 0.69 0.496368
Target:  5'- gUUGGCgcugCCGGGCGgguUCGGgGcGGCACGCa -3'
miRNA:   3'- gGGCCG----GGCCUGC---AGCCgC-CUGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 22288 0.68 0.560567
Target:  5'- gCC-GCgCGGGCGgagCGGCGGcgGCGCg -3'
miRNA:   3'- gGGcCGgGCCUGCa--GCCGCCugUGCG- -5'
5395 5' -62.9 NC_001798.1 + 22327 0.68 0.548438
Target:  5'- gCCGccacggacgcggacGCgCGGGCGUCggGGCGGGgcCGCGCa -3'
miRNA:   3'- gGGC--------------CGgGCCUGCAG--CCGCCU--GUGCG- -5'
5395 5' -62.9 NC_001798.1 + 22398 0.68 0.579366
Target:  5'- cCCCGGCgagCCgGGGCG-CGGCGG-CGucgauCGCu -3'
miRNA:   3'- -GGGCCG---GG-CCUGCaGCCGCCuGU-----GCG- -5'
5395 5' -62.9 NC_001798.1 + 22678 0.72 0.342492
Target:  5'- cCCCGGUCgGaggcGAUGUCGGCGGAgCA-GCg -3'
miRNA:   3'- -GGGCCGGgC----CUGCAGCCGCCU-GUgCG- -5'
5395 5' -62.9 NC_001798.1 + 22969 0.68 0.569948
Target:  5'- cCCCGGCguCCGGGgaggcCGUCGacgagccugccGCGGACgGCGUc -3'
miRNA:   3'- -GGGCCG--GGCCU-----GCAGC-----------CGCCUG-UGCG- -5'
5395 5' -62.9 NC_001798.1 + 23534 0.68 0.569948
Target:  5'- cCUCGGCgCGGACGacgaggaGGCGGGgGUGCc -3'
miRNA:   3'- -GGGCCGgGCCUGCag-----CCGCCUgUGCG- -5'
5395 5' -62.9 NC_001798.1 + 23620 0.79 0.119585
Target:  5'- cCCCGGCCCGGACccccgCGGC-GAC-CGCg -3'
miRNA:   3'- -GGGCCGGGCCUGca---GCCGcCUGuGCG- -5'
5395 5' -62.9 NC_001798.1 + 23665 0.69 0.514405
Target:  5'- gCCgGGCCCGcGCGgCGGUGGccgGC-CGCg -3'
miRNA:   3'- -GGgCCGGGCcUGCaGCCGCC---UGuGCG- -5'
5395 5' -62.9 NC_001798.1 + 23724 0.67 0.6116
Target:  5'- cCCCGGCgggucgagCUGGACGcCGacGCGGccuccggcgccuucuACGCGCg -3'
miRNA:   3'- -GGGCCG--------GGCCUGCaGC--CGCC---------------UGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 23817 0.71 0.37953
Target:  5'- gCCGGCCCcccgcccccgGGGCGcgugcuguaCGGCGGGCugGg -3'
miRNA:   3'- gGGCCGGG----------CCUGCa--------GCCGCCUGugCg -5'
5395 5' -62.9 NC_001798.1 + 23870 0.72 0.328425
Target:  5'- cCCCGGCCUcugggGGGCGcccgaGGCGGAggagGCGCg -3'
miRNA:   3'- -GGGCCGGG-----CCUGCag---CCGCCUg---UGCG- -5'
5395 5' -62.9 NC_001798.1 + 23932 0.7 0.461193
Target:  5'- cCCCGGCgCCcguguGGGCGcCGaGCuGGGCgACGCg -3'
miRNA:   3'- -GGGCCG-GG-----CCUGCaGC-CG-CCUG-UGCG- -5'
5395 5' -62.9 NC_001798.1 + 24083 0.67 0.607796
Target:  5'- uUCCGGauCUCGGGCG-CGGCGcGCAacaGCa -3'
miRNA:   3'- -GGGCC--GGGCCUGCaGCCGCcUGUg--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.