miRNA display CGI


Results 61 - 80 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5395 5' -62.9 NC_001798.1 + 24554 0.72 0.342492
Target:  5'- gCCGGCggUGGugG-CGGCGGccgGCGCGCg -3'
miRNA:   3'- gGGCCGg-GCCugCaGCCGCC---UGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 24708 0.71 0.37953
Target:  5'- cCCCGcGCCCGGG-GcCcGCGGGCGCGg -3'
miRNA:   3'- -GGGC-CGGGCCUgCaGcCGCCUGUGCg -5'
5395 5' -62.9 NC_001798.1 + 24899 0.66 0.645892
Target:  5'- gCCCugGGCCCGG-CGcugCcGCGGAgccCGCGCc -3'
miRNA:   3'- -GGG--CCGGGCCuGCa--GcCGCCU---GUGCG- -5'
5395 5' -62.9 NC_001798.1 + 25079 0.75 0.23658
Target:  5'- cCCCGGCCaGGGCGcCGcCGGGCgGCGCc -3'
miRNA:   3'- -GGGCCGGgCCUGCaGCcGCCUG-UGCG- -5'
5395 5' -62.9 NC_001798.1 + 25592 0.69 0.496368
Target:  5'- aCCUGGCCgCGGgccGCGcCGG-GGGCGgGCc -3'
miRNA:   3'- -GGGCCGG-GCC---UGCaGCCgCCUGUgCG- -5'
5395 5' -62.9 NC_001798.1 + 25726 0.72 0.321553
Target:  5'- aCCGGCgCCcccGACGucUCGGCgcuGGGCGCGCa -3'
miRNA:   3'- gGGCCG-GGc--CUGC--AGCCG---CCUGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 25880 0.68 0.560567
Target:  5'- aCUGGCCCGccgacgggcccGugGUCucGCGGcaGCACGCc -3'
miRNA:   3'- gGGCCGGGC-----------CugCAGc-CGCC--UGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 26185 0.72 0.328425
Target:  5'- uCCCGGCgCUGGACGgcCGGgccgccgccuCGGGCGCGg -3'
miRNA:   3'- -GGGCCG-GGCCUGCa-GCC----------GCCUGUGCg -5'
5395 5' -62.9 NC_001798.1 + 26237 0.68 0.569948
Target:  5'- gCCCGGCgcgCCGGACuUCuGCgaGGACgagGCGCa -3'
miRNA:   3'- -GGGCCG---GGCCUGcAGcCG--CCUG---UGCG- -5'
5395 5' -62.9 NC_001798.1 + 26356 0.73 0.307474
Target:  5'- -gCGGCCCGGcggagcugcGCGggccgCGGCGGgaguucuGCGCGCg -3'
miRNA:   3'- ggGCCGGGCC---------UGCa----GCCGCC-------UGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 26464 0.72 0.363652
Target:  5'- gCCC-GCCCccgcagauacgcuGGGCGUCGGCcgcGGGcCGCGCg -3'
miRNA:   3'- -GGGcCGGG-------------CCUGCAGCCG---CCU-GUGCG- -5'
5395 5' -62.9 NC_001798.1 + 27217 0.66 0.674387
Target:  5'- cCCCgGGgCgGGGCG-CGGgGGAgGCGg -3'
miRNA:   3'- -GGG-CCgGgCCUGCaGCCgCCUgUGCg -5'
5395 5' -62.9 NC_001798.1 + 27583 0.69 0.469866
Target:  5'- gCCGGCuCCGGGgGagGGaCGGggaaggggGCGCGCg -3'
miRNA:   3'- gGGCCG-GGCCUgCagCC-GCC--------UGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 28361 0.69 0.469866
Target:  5'- -gCGGCCCcccGCGUCcccgcccGCGGACGCGCc -3'
miRNA:   3'- ggGCCGGGcc-UGCAGc------CGCCUGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 28616 0.75 0.231292
Target:  5'- gCCUGGCCC-GACGggGGUccuGGGCGCGCg -3'
miRNA:   3'- -GGGCCGGGcCUGCagCCG---CCUGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 28666 0.68 0.560567
Target:  5'- uUCCGGCgCCGcGugG-CGGCGGcCGagGCg -3'
miRNA:   3'- -GGGCCG-GGC-CugCaGCCGCCuGUg-CG- -5'
5395 5' -62.9 NC_001798.1 + 28741 0.79 0.119585
Target:  5'- gCCCGaGCCCGGGCccacgaagaCGGCGGACcCGCg -3'
miRNA:   3'- -GGGC-CGGGCCUGca-------GCCGCCUGuGCG- -5'
5395 5' -62.9 NC_001798.1 + 28822 0.67 0.607796
Target:  5'- gCgGGCCCGGGcCGUCGgGCGGucuaGgGUu -3'
miRNA:   3'- gGgCCGGGCCU-GCAGC-CGCCug--UgCG- -5'
5395 5' -62.9 NC_001798.1 + 29406 0.71 0.400616
Target:  5'- gCCGGCggggcgCCGGggggacucccaucuGCGUCGGCGGggggcggcGCAUGCu -3'
miRNA:   3'- gGGCCG------GGCC--------------UGCAGCCGCC--------UGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 29777 0.73 0.301586
Target:  5'- cCCCGGCCCGGcACGagcUCccgGGCGGACccCGg -3'
miRNA:   3'- -GGGCCGGGCC-UGC---AG---CCGCCUGu-GCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.