miRNA display CGI


Results 81 - 100 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5395 5' -62.9 NC_001798.1 + 29893 0.67 0.636366
Target:  5'- aCCCGGCUgCGG--GUUGGgGGugGuCGCg -3'
miRNA:   3'- -GGGCCGG-GCCugCAGCCgCCugU-GCG- -5'
5395 5' -62.9 NC_001798.1 + 29960 0.73 0.288186
Target:  5'- cCCCGGCCCGcuuaaGCgGUCGGgGGACccccgugggccguGCGCc -3'
miRNA:   3'- -GGGCCGGGCc----UG-CAGCCgCCUG-------------UGCG- -5'
5395 5' -62.9 NC_001798.1 + 30433 0.69 0.487457
Target:  5'- cCCCGGCCCGGcCccCGGCcGA-GCGCc -3'
miRNA:   3'- -GGGCCGGGCCuGcaGCCGcCUgUGCG- -5'
5395 5' -62.9 NC_001798.1 + 30750 0.66 0.674387
Target:  5'- cCCCGGaCCCGcGugGaggccgaGGCGGcCGUGCg -3'
miRNA:   3'- -GGGCC-GGGC-CugCag-----CCGCCuGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 30919 0.67 0.595449
Target:  5'- aCCUGGCCgacggugagggcggCGGGgGUCGGgCGGgggGCGgGCg -3'
miRNA:   3'- -GGGCCGG--------------GCCUgCAGCC-GCC---UGUgCG- -5'
5395 5' -62.9 NC_001798.1 + 31143 0.71 0.403005
Target:  5'- cCCCGGCgCGGGgG-CGGCGG-UGCGg -3'
miRNA:   3'- -GGGCCGgGCCUgCaGCCGCCuGUGCg -5'
5395 5' -62.9 NC_001798.1 + 31668 0.74 0.258751
Target:  5'- gCCgGGCCCGcgccgcccGcCGUgcCGGUGGACGCGCa -3'
miRNA:   3'- -GGgCCGGGC--------CuGCA--GCCGCCUGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 31759 0.68 0.55123
Target:  5'- gUCUGGgCCGGGCa--GGCGcgaccGACGCGCg -3'
miRNA:   3'- -GGGCCgGGCCUGcagCCGC-----CUGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 32034 0.72 0.356254
Target:  5'- aCCgCGGCCaCGGgccgcucgccccgGCGUCcGCGGGCGcCGCg -3'
miRNA:   3'- -GG-GCCGG-GCC-------------UGCAGcCGCCUGU-GCG- -5'
5395 5' -62.9 NC_001798.1 + 32371 0.68 0.579366
Target:  5'- cCCCGaGCCCGGggcccGCGaccCGGCGcccggccuCACGCg -3'
miRNA:   3'- -GGGC-CGGGCC-----UGCa--GCCGCcu------GUGCG- -5'
5395 5' -62.9 NC_001798.1 + 33252 0.71 0.406204
Target:  5'- gCCCGGCCuCGuucuGGCucccugucuugguggGUgGGCGGGCugGCu -3'
miRNA:   3'- -GGGCCGG-GC----CUG---------------CAgCCGCCUGugCG- -5'
5395 5' -62.9 NC_001798.1 + 34555 0.68 0.541941
Target:  5'- cCCCGgaGCCUGGGuCcccCGGCGGACggcucACGCg -3'
miRNA:   3'- -GGGC--CGGGCCU-Gca-GCCGCCUG-----UGCG- -5'
5395 5' -62.9 NC_001798.1 + 34840 0.72 0.335405
Target:  5'- gCCCGGgCCGGACcgccgggCGGgGGACGCc- -3'
miRNA:   3'- -GGGCCgGGCCUGca-----GCCgCCUGUGcg -5'
5395 5' -62.9 NC_001798.1 + 34998 0.75 0.226105
Target:  5'- cUCCGGCCgGGGCGcaccUCGGCGGcCAaGCc -3'
miRNA:   3'- -GGGCCGGgCCUGC----AGCCGCCuGUgCG- -5'
5395 5' -62.9 NC_001798.1 + 35028 0.74 0.27647
Target:  5'- cCCCGGCCCgcccGGGgGUCcccgaggcaagaGGCGGACccucggagGCGCg -3'
miRNA:   3'- -GGGCCGGG----CCUgCAG------------CCGCCUG--------UGCG- -5'
5395 5' -62.9 NC_001798.1 + 35560 0.71 0.400616
Target:  5'- gCCCGGCCCGGccccggagcccgcgGCGcugcUCGGCuGcGGC-CGCg -3'
miRNA:   3'- -GGGCCGGGCC--------------UGC----AGCCG-C-CUGuGCG- -5'
5395 5' -62.9 NC_001798.1 + 36412 0.68 0.55123
Target:  5'- cCCCuG-CCGGGCGg-GGCGGugGgGCg -3'
miRNA:   3'- -GGGcCgGGCCUGCagCCGCCugUgCG- -5'
5395 5' -62.9 NC_001798.1 + 36494 0.72 0.341779
Target:  5'- gCCGGCgcgacgcgggcggCCGGGCGggggcgcgCGGCGGccgggcggggGCGCGCg -3'
miRNA:   3'- gGGCCG-------------GGCCUGCa-------GCCGCC----------UGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 36567 0.71 0.403005
Target:  5'- gCgCGGCggCCGGGCGggggcgcgCGGCGGccgggcggggGCGCGCg -3'
miRNA:   3'- -GgGCCG--GGCCUGCa-------GCCGCC----------UGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 36611 0.69 0.469866
Target:  5'- -nCGGCggCCGGGCGggggcgcgCGGCGGccgggcggggGCGCGCu -3'
miRNA:   3'- ggGCCG--GGCCUGCa-------GCCGCC----------UGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.