miRNA display CGI


Results 1 - 20 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5395 5' -62.9 NC_001798.1 + 154398 0.67 0.636366
Target:  5'- --gGGCgcgaaggCGGGCGgcggCGGCGGGCGgGCg -3'
miRNA:   3'- gggCCGg------GCCUGCa---GCCGCCUGUgCG- -5'
5395 5' -62.9 NC_001798.1 + 154178 0.72 0.334702
Target:  5'- gCCCGGagCCGGagcGCGUCggGGCGGgagaguucacucgGCACGCa -3'
miRNA:   3'- -GGGCCg-GGCC---UGCAG--CCGCC-------------UGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 154108 0.67 0.626837
Target:  5'- gCCGGCgCCGGGgacccCGgCGGCGGGgACcccgGCg -3'
miRNA:   3'- gGGCCG-GGCCU-----GCaGCCGCCUgUG----CG- -5'
5395 5' -62.9 NC_001798.1 + 153781 0.69 0.496368
Target:  5'- -gCGGCCCGcgcuccuugcgcGGCGgcggCGGgGGGCAgGCg -3'
miRNA:   3'- ggGCCGGGC------------CUGCa---GCCgCCUGUgCG- -5'
5395 5' -62.9 NC_001798.1 + 153662 0.68 0.523524
Target:  5'- uCCC-GCgCGGcGCGUCcgcgGGCGGGgACGCg -3'
miRNA:   3'- -GGGcCGgGCC-UGCAG----CCGCCUgUGCG- -5'
5395 5' -62.9 NC_001798.1 + 153227 0.78 0.145029
Target:  5'- -aCGGCCCGGGCccgcggCGGCGGAggaccCGCGCg -3'
miRNA:   3'- ggGCCGGGCCUGca----GCCGCCU-----GUGCG- -5'
5395 5' -62.9 NC_001798.1 + 153069 0.68 0.532704
Target:  5'- cCCUGGggCGGGCGgagCGGCGgGGCgGCGCc -3'
miRNA:   3'- -GGGCCggGCCUGCa--GCCGC-CUG-UGCG- -5'
5395 5' -62.9 NC_001798.1 + 153029 0.72 0.321553
Target:  5'- uCCgGGCCC--GCG-CGGCGG-CGCGCg -3'
miRNA:   3'- -GGgCCGGGccUGCaGCCGCCuGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 151548 0.69 0.511682
Target:  5'- aCCCacgGGCCCacccccacaGGaucccugcGCGUCGGCGGGCguggggcugcccugGCGCu -3'
miRNA:   3'- -GGG---CCGGG---------CC--------UGCAGCCGCCUG--------------UGCG- -5'
5395 5' -62.9 NC_001798.1 + 151272 0.68 0.532704
Target:  5'- gCCGGCCCGcACGgccgccUCGGCcucCACGCg -3'
miRNA:   3'- gGGCCGGGCcUGC------AGCCGccuGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 150907 0.76 0.188073
Target:  5'- cCCCGcGCCgGGGCGcucuUCGGgGGGCGgGCg -3'
miRNA:   3'- -GGGC-CGGgCCUGC----AGCCgCCUGUgCG- -5'
5395 5' -62.9 NC_001798.1 + 150852 0.73 0.282589
Target:  5'- gCCGGUCgGGuCG-CGGCGGGCugGg -3'
miRNA:   3'- gGGCCGGgCCuGCaGCCGCCUGugCg -5'
5395 5' -62.9 NC_001798.1 + 150563 0.68 0.579366
Target:  5'- -gCGGCCCGGggcccGCGg-GGCGG-CGCGg -3'
miRNA:   3'- ggGCCGGGCC-----UGCagCCGCCuGUGCg -5'
5395 5' -62.9 NC_001798.1 + 150445 0.67 0.587871
Target:  5'- cUCCGGacgcgCgGGGCGaCGGCcgcgcggGGGCGCGCg -3'
miRNA:   3'- -GGGCCg----GgCCUGCaGCCG-------CCUGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 150367 0.66 0.683834
Target:  5'- aCCGGCacggCGGGCGgcgCGGgccCGGcCGCGUc -3'
miRNA:   3'- gGGCCGg---GCCUGCa--GCC---GCCuGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 150292 0.69 0.477743
Target:  5'- gCCCGGCCCaGACucugugcuuggguGUCGGUcugagccuGGGuCAUGCg -3'
miRNA:   3'- -GGGCCGGGcCUG-------------CAGCCG--------CCU-GUGCG- -5'
5395 5' -62.9 NC_001798.1 + 149950 0.69 0.487457
Target:  5'- aCCgCGGCCUgGGACGaCGGagacgccgaCGGGgGCGCg -3'
miRNA:   3'- -GG-GCCGGG-CCUGCaGCC---------GCCUgUGCG- -5'
5395 5' -62.9 NC_001798.1 + 149780 0.68 0.560567
Target:  5'- cCCCaGCgCCGGACG-CGGaCGcGACGCu- -3'
miRNA:   3'- -GGGcCG-GGCCUGCaGCC-GC-CUGUGcg -5'
5395 5' -62.9 NC_001798.1 + 149235 0.78 0.148538
Target:  5'- cCCCguGGCCCgcggGGGCGUCGccggccggcGCGGGCGCGCc -3'
miRNA:   3'- -GGG--CCGGG----CCUGCAGC---------CGCCUGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 149167 0.66 0.645892
Target:  5'- cCUCGG-CCGGugGUcCGGUGGGgG-GCg -3'
miRNA:   3'- -GGGCCgGGCCugCA-GCCGCCUgUgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.