miRNA display CGI


Results 21 - 40 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5395 5' -62.9 NC_001798.1 + 148905 0.66 0.674387
Target:  5'- cCCCGGCCCcccuGCG-CGGgGGAgcUGCa -3'
miRNA:   3'- -GGGCCGGGcc--UGCaGCCgCCUguGCG- -5'
5395 5' -62.9 NC_001798.1 + 148418 0.67 0.588817
Target:  5'- gUgGGCgCCGGgGCGggGGUGGGCACGg -3'
miRNA:   3'- gGgCCG-GGCC-UGCagCCGCCUGUGCg -5'
5395 5' -62.9 NC_001798.1 + 148367 0.69 0.484798
Target:  5'- uCCCaGCCagggugaggaggggCGGGCGU-GGCGGGCAgGUg -3'
miRNA:   3'- -GGGcCGG--------------GCCUGCAgCCGCCUGUgCG- -5'
5395 5' -62.9 NC_001798.1 + 148258 0.68 0.539164
Target:  5'- cCCCGcaGCCaggguaaggaggggCGGGCGU-GGCGGGCAgGUg -3'
miRNA:   3'- -GGGC--CGG--------------GCCUGCAgCCGCCUGUgCG- -5'
5395 5' -62.9 NC_001798.1 + 147243 0.69 0.487457
Target:  5'- cCCCGGggcCCCGGgccGCGcCGGCGGcguuucCGCGUu -3'
miRNA:   3'- -GGGCC---GGGCC---UGCaGCCGCCu-----GUGCG- -5'
5395 5' -62.9 NC_001798.1 + 147211 0.83 0.071259
Target:  5'- gUCCGGCCCGGGCcccCGGCGGA-GCGCg -3'
miRNA:   3'- -GGGCCGGGCCUGca-GCCGCCUgUGCG- -5'
5395 5' -62.9 NC_001798.1 + 147175 0.7 0.427379
Target:  5'- gCCCGGCgCCGGGCGgaaGGCGucCccCGCc -3'
miRNA:   3'- -GGGCCG-GGCCUGCag-CCGCcuGu-GCG- -5'
5395 5' -62.9 NC_001798.1 + 147053 0.67 0.617311
Target:  5'- cCCCGG-CCGGAgGggcccccgcaccUCGGCGG-C-CGCc -3'
miRNA:   3'- -GGGCCgGGCCUgC------------AGCCGCCuGuGCG- -5'
5395 5' -62.9 NC_001798.1 + 146084 0.68 0.569948
Target:  5'- --gGGUCCgGGGCGa-GGCGGGCGgGCg -3'
miRNA:   3'- gggCCGGG-CCUGCagCCGCCUGUgCG- -5'
5395 5' -62.9 NC_001798.1 + 144731 0.7 0.452605
Target:  5'- aCCCGGCCCuGACGggugcgUGGCuGACG-GCc -3'
miRNA:   3'- -GGGCCGGGcCUGCa-----GCCGcCUGUgCG- -5'
5395 5' -62.9 NC_001798.1 + 144525 0.68 0.579366
Target:  5'- gCCGGCgCCGaccucGCGUCGGgGaGACcCGCc -3'
miRNA:   3'- gGGCCG-GGCc----UGCAGCCgC-CUGuGCG- -5'
5395 5' -62.9 NC_001798.1 + 143809 0.7 0.444106
Target:  5'- aCCaGGCCCGGGCGgCGcGCGGcCA-GCc -3'
miRNA:   3'- gGG-CCGGGCCUGCaGC-CGCCuGUgCG- -5'
5395 5' -62.9 NC_001798.1 + 143357 0.66 0.693246
Target:  5'- uCCCGGUCCGGcucucCGUCGaGaGGcccCACGUg -3'
miRNA:   3'- -GGGCCGGGCCu----GCAGC-CgCCu--GUGCG- -5'
5395 5' -62.9 NC_001798.1 + 141553 0.67 0.607796
Target:  5'- aCCCGGguguucgcguuCgCGGAgGagcugCGGCGGcgGCACGCg -3'
miRNA:   3'- -GGGCC-----------GgGCCUgCa----GCCGCC--UGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 141039 0.69 0.487457
Target:  5'- cCCCGGCCUGGACG-CGacccagaGGAccCugGCc -3'
miRNA:   3'- -GGGCCGGGCCUGCaGCcg-----CCU--GugCG- -5'
5395 5' -62.9 NC_001798.1 + 140505 0.66 0.693246
Target:  5'- aCCCGGCCaaccuucCGg-GGUGGACGCGg -3'
miRNA:   3'- -GGGCCGGgccu---GCagCCGCCUGUGCg -5'
5395 5' -62.9 NC_001798.1 + 139936 0.66 0.693246
Target:  5'- gCgGGCCCuGGCGgcgcacgggGGCGaaGACGCGCg -3'
miRNA:   3'- gGgCCGGGcCUGCag-------CCGC--CUGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 139317 0.67 0.626837
Target:  5'- cCCCGcGUCCGcauCGcCGGCGcccGCGCGCg -3'
miRNA:   3'- -GGGC-CGGGCcu-GCaGCCGCc--UGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 137981 0.7 0.444106
Target:  5'- cCCCcGCCUGGGCG-CGccgcagcucGCGGuCGCGCg -3'
miRNA:   3'- -GGGcCGGGCCUGCaGC---------CGCCuGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 137895 0.68 0.541014
Target:  5'- gUCGGCCCGGAgaagauccgccucCGcCgGGCGGccCGCGCc -3'
miRNA:   3'- gGGCCGGGCCU-------------GCaG-CCGCCu-GUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.