miRNA display CGI


Results 41 - 60 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5395 5' -62.9 NC_001798.1 + 137421 0.69 0.50265
Target:  5'- uCCgGGUCCGGGaccgggacccgcccCG-CGG-GGACGCGCu -3'
miRNA:   3'- -GGgCCGGGCCU--------------GCaGCCgCCUGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 135807 0.68 0.541941
Target:  5'- gCgCGGCCCgGGGCGUCauGGaGGACGCc- -3'
miRNA:   3'- -GgGCCGGG-CCUGCAG--CCgCCUGUGcg -5'
5395 5' -62.9 NC_001798.1 + 135305 0.7 0.435696
Target:  5'- gCCCugGGCCCGGGcCGUgcUGGagcgccuggugcCGGACGCGUg -3'
miRNA:   3'- -GGG--CCGGGCCU-GCA--GCC------------GCCUGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 135258 0.72 0.356989
Target:  5'- gCgGGCCUGGAaa--GGCuGGACGCGCu -3'
miRNA:   3'- gGgCCGGGCCUgcagCCG-CCUGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 134463 0.7 0.444106
Target:  5'- cCCCGGCgCGcg-GUUGGCguGGGCGCGCc -3'
miRNA:   3'- -GGGCCGgGCcugCAGCCG--CCUGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 134153 0.66 0.683834
Target:  5'- uCUCGGCCCccgGGGcCGUCG-CGGccgccCGCGCc -3'
miRNA:   3'- -GGGCCGGG---CCU-GCAGCcGCCu----GUGCG- -5'
5395 5' -62.9 NC_001798.1 + 134054 0.67 0.636366
Target:  5'- aUCUGGUCUGucgcGACGccgCGGgGGAgGCGCg -3'
miRNA:   3'- -GGGCCGGGC----CUGCa--GCCgCCUgUGCG- -5'
5395 5' -62.9 NC_001798.1 + 133015 0.75 0.226105
Target:  5'- cUCCGG-CCGGACGUCgcgccggccgaGGUGGuCGCGCu -3'
miRNA:   3'- -GGGCCgGGCCUGCAG-----------CCGCCuGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 132696 0.66 0.693246
Target:  5'- aCgCGGCgCaGGCG-CGGgGGuCGCGCa -3'
miRNA:   3'- -GgGCCGgGcCUGCaGCCgCCuGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 132174 0.7 0.460331
Target:  5'- cCCCGGacgccccCCCGGACGccaccuucuUCGGggagcUGGAgGCGCg -3'
miRNA:   3'- -GGGCC-------GGGCCUGC---------AGCC-----GCCUgUGCG- -5'
5395 5' -62.9 NC_001798.1 + 132138 0.69 0.487457
Target:  5'- cCCUGcGCcgCCGGGgGcCGGCGGGCgggGCGCc -3'
miRNA:   3'- -GGGC-CG--GGCCUgCaGCCGCCUG---UGCG- -5'
5395 5' -62.9 NC_001798.1 + 131565 0.68 0.541941
Target:  5'- -aCGGCCCGGuGCGUaacuGUGGucCGCGCg -3'
miRNA:   3'- ggGCCGGGCC-UGCAgc--CGCCu-GUGCG- -5'
5395 5' -62.9 NC_001798.1 + 131337 0.73 0.295146
Target:  5'- gCCCGcGCCCcgggcgcGACGUCGGCGcccGGCGCGg -3'
miRNA:   3'- -GGGC-CGGGc------CUGCAGCCGC---CUGUGCg -5'
5395 5' -62.9 NC_001798.1 + 130187 0.66 0.693246
Target:  5'- aCCGGUcgaucUCGG-CGU-GGUGGgACACGCu -3'
miRNA:   3'- gGGCCG-----GGCCuGCAgCCGCC-UGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 130127 0.69 0.505352
Target:  5'- gCUCGGCCUcGugGUCGGgGGcCACu- -3'
miRNA:   3'- -GGGCCGGGcCugCAGCCgCCuGUGcg -5'
5395 5' -62.9 NC_001798.1 + 128946 0.66 0.683834
Target:  5'- uUCGcGCCCGGGCGcguuccgggccCGGaGGAgGCGCu -3'
miRNA:   3'- gGGC-CGGGCCUGCa----------GCCgCCUgUGCG- -5'
5395 5' -62.9 NC_001798.1 + 128498 0.69 0.505352
Target:  5'- gCCUGcggcuggacGCCCaGuCGUCGGCGGugAUGUu -3'
miRNA:   3'- -GGGC---------CGGGcCuGCAGCCGCCugUGCG- -5'
5395 5' -62.9 NC_001798.1 + 128064 0.68 0.529943
Target:  5'- cCCCGGuccCCCGGACcccgacccgaugugGUCGGCGucGGCgauccccaACGCa -3'
miRNA:   3'- -GGGCC---GGGCCUG--------------CAGCCGC--CUG--------UGCG- -5'
5395 5' -62.9 NC_001798.1 + 127343 0.71 0.371912
Target:  5'- cCCCGaGCCUGGGCGUCccCGuGACcCGCg -3'
miRNA:   3'- -GGGC-CGGGCCUGCAGccGC-CUGuGCG- -5'
5395 5' -62.9 NC_001798.1 + 126029 0.74 0.24746
Target:  5'- uCCCGcgcuuagcgagcGCCUGGACG-CGGCGGACGauCGUc -3'
miRNA:   3'- -GGGC------------CGGGCCUGCaGCCGCCUGU--GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.