miRNA display CGI


Results 61 - 80 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5395 5' -62.9 NC_001798.1 + 125461 0.68 0.523524
Target:  5'- uCCCGacGCCCgGGACcaCGGUcuGGugGCGCu -3'
miRNA:   3'- -GGGC--CGGG-CCUGcaGCCG--CCugUGCG- -5'
5395 5' -62.9 NC_001798.1 + 122093 0.67 0.588817
Target:  5'- gCgGGCCUGGAgcCGccCGGCGGgGgGCGCu -3'
miRNA:   3'- gGgCCGGGCCU--GCa-GCCGCC-UgUGCG- -5'
5395 5' -62.9 NC_001798.1 + 121435 0.66 0.655409
Target:  5'- uCCCGGCgcacCCGGaccuccugccgcGCGUCcccagcGCGGGCGgGCu -3'
miRNA:   3'- -GGGCCG----GGCC------------UGCAGc-----CGCCUGUgCG- -5'
5395 5' -62.9 NC_001798.1 + 121117 0.67 0.607796
Target:  5'- uUCCGGCaCCGGGaagggcucgcacCGcCGGCcGGGCcaugaACGCg -3'
miRNA:   3'- -GGGCCG-GGCCU------------GCaGCCG-CCUG-----UGCG- -5'
5395 5' -62.9 NC_001798.1 + 119419 0.66 0.655409
Target:  5'- uCCUGGCCCuGGCccCGGCGGuuCGgGUg -3'
miRNA:   3'- -GGGCCGGGcCUGcaGCCGCCu-GUgCG- -5'
5395 5' -62.9 NC_001798.1 + 118993 0.7 0.419157
Target:  5'- cCCUGGCCCGcGAgauaGUCGcGCGG-CugGUc -3'
miRNA:   3'- -GGGCCGGGC-CUg---CAGC-CGCCuGugCG- -5'
5395 5' -62.9 NC_001798.1 + 117656 0.7 0.461193
Target:  5'- gCCGGCCCugcaacccgcggGGACGcgcggcCGGCGGcgugUACGCg -3'
miRNA:   3'- gGGCCGGG------------CCUGCa-----GCCGCCu---GUGCG- -5'
5395 5' -62.9 NC_001798.1 + 116185 0.79 0.134954
Target:  5'- gCCgGGCCCGGAgcUgGGCGGGCAgGCu -3'
miRNA:   3'- -GGgCCGGGCCUgcAgCCGCCUGUgCG- -5'
5395 5' -62.9 NC_001798.1 + 115838 0.68 0.532704
Target:  5'- gCCCggGGCCUGGagcucgGCGUUGGCcGcCACGCc -3'
miRNA:   3'- -GGG--CCGGGCC------UGCAGCCGcCuGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 115531 0.7 0.461193
Target:  5'- uCgCGGcCCCGGcCGgcccCGGCgcGGACAUGCa -3'
miRNA:   3'- -GgGCC-GGGCCuGCa---GCCG--CCUGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 115288 0.66 0.664909
Target:  5'- aCCCGGCCaUGGAgCGcuUCGcCGcGCACGCc -3'
miRNA:   3'- -GGGCCGG-GCCU-GC--AGCcGCcUGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 113951 0.67 0.6116
Target:  5'- -gCGGCCCGuGGguuguuagucgcgucCGcCGGCGGugAgGCg -3'
miRNA:   3'- ggGCCGGGC-CU---------------GCaGCCGCCugUgCG- -5'
5395 5' -62.9 NC_001798.1 + 113640 0.69 0.478622
Target:  5'- gCCGGCgCCGccauguggguGGCGgCGGCGGAC-UGCu -3'
miRNA:   3'- gGGCCG-GGC----------CUGCaGCCGCCUGuGCG- -5'
5395 5' -62.9 NC_001798.1 + 113338 0.7 0.444106
Target:  5'- aCgGGUggaCCGGACG--GGCGGugGCGCc -3'
miRNA:   3'- gGgCCG---GGCCUGCagCCGCCugUGCG- -5'
5395 5' -62.9 NC_001798.1 + 112765 0.66 0.693246
Target:  5'- aUCaGCCCGcGGgGagGGCGGACGCa- -3'
miRNA:   3'- gGGcCGGGC-CUgCagCCGCCUGUGcg -5'
5395 5' -62.9 NC_001798.1 + 111813 0.72 0.342492
Target:  5'- gCCGGUCgCGGGCGUCcaggGGCuGGCGCGg -3'
miRNA:   3'- gGGCCGG-GCCUGCAG----CCGcCUGUGCg -5'
5395 5' -62.9 NC_001798.1 + 111757 0.74 0.264552
Target:  5'- cCCCGGuCCCGGcCaUCGGuUGGGgGCGCg -3'
miRNA:   3'- -GGGCC-GGGCCuGcAGCC-GCCUgUGCG- -5'
5395 5' -62.9 NC_001798.1 + 111615 0.67 0.598296
Target:  5'- uCCUGGagcCCCGGGgG-CGGCaGACuCGCg -3'
miRNA:   3'- -GGGCC---GGGCCUgCaGCCGcCUGuGCG- -5'
5395 5' -62.9 NC_001798.1 + 111266 0.66 0.693246
Target:  5'- aUCGGCCa--ACGUCGGUucgucGGGCGCGg -3'
miRNA:   3'- gGGCCGGgccUGCAGCCG-----CCUGUGCg -5'
5395 5' -62.9 NC_001798.1 + 110375 0.7 0.444106
Target:  5'- gCUGGCCCagGGGCcggUGGCGGGCACc- -3'
miRNA:   3'- gGGCCGGG--CCUGca-GCCGCCUGUGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.