miRNA display CGI


Results 81 - 100 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5395 5' -62.9 NC_001798.1 + 110317 0.74 0.258751
Target:  5'- cCCCGGCCgGGGaggucaUGUCGGUgcugcugguGGACACGg -3'
miRNA:   3'- -GGGCCGGgCCU------GCAGCCG---------CCUGUGCg -5'
5395 5' -62.9 NC_001798.1 + 109753 0.69 0.505352
Target:  5'- aCCaCGGCCCuguguacguccGACGUCGcGCGGcgaccCACGCc -3'
miRNA:   3'- -GG-GCCGGGc----------CUGCAGC-CGCCu----GUGCG- -5'
5395 5' -62.9 NC_001798.1 + 109669 0.74 0.27647
Target:  5'- gCCaCGGCcguccuCCGGGCGccguuccUGGCGGGCGCGCc -3'
miRNA:   3'- -GG-GCCG------GGCCUGCa------GCCGCCUGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 109435 0.67 0.607796
Target:  5'- -gCGGCCCGccUG-CGGCuGGAgGCGCg -3'
miRNA:   3'- ggGCCGGGCcuGCaGCCG-CCUgUGCG- -5'
5395 5' -62.9 NC_001798.1 + 109360 0.69 0.496368
Target:  5'- gCCGGCCUGGcCGcccggggagCaGCGGGCuGCGCg -3'
miRNA:   3'- gGGCCGGGCCuGCa--------GcCGCCUG-UGCG- -5'
5395 5' -62.9 NC_001798.1 + 109202 0.71 0.411032
Target:  5'- --aGGaCCCGGGCucCGGCacGGACGCGCg -3'
miRNA:   3'- gggCC-GGGCCUGcaGCCG--CCUGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 109103 0.66 0.674387
Target:  5'- gCUCGGCgCUGGACGcccucCGGCgGGugGCcgGCu -3'
miRNA:   3'- -GGGCCG-GGCCUGCa----GCCG-CCugUG--CG- -5'
5395 5' -62.9 NC_001798.1 + 108832 0.77 0.167261
Target:  5'- aCgUGGCCCguGGGCGUCuggacgacgGGCGGGCugGCg -3'
miRNA:   3'- -GgGCCGGG--CCUGCAG---------CCGCCUGugCG- -5'
5395 5' -62.9 NC_001798.1 + 108214 0.67 0.617311
Target:  5'- gUUGGCCCGcACGUacUGGCGcGACACa- -3'
miRNA:   3'- gGGCCGGGCcUGCA--GCCGC-CUGUGcg -5'
5395 5' -62.9 NC_001798.1 + 106210 0.66 0.664909
Target:  5'- -aCGaGCCgGGucACG-CGGCuGACGCGCa -3'
miRNA:   3'- ggGC-CGGgCC--UGCaGCCGcCUGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 106102 0.67 0.598296
Target:  5'- aCCCGGCgccgcgaccgCCGGgucuGCGguucCGGCGG-CACGg -3'
miRNA:   3'- -GGGCCG----------GGCC----UGCa---GCCGCCuGUGCg -5'
5395 5' -62.9 NC_001798.1 + 105902 0.66 0.64494
Target:  5'- uUuuGGUCCGGG-GUCugcucuuGGCGGccaccgGCACGCa -3'
miRNA:   3'- -GggCCGGGCCUgCAG-------CCGCC------UGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 105292 0.7 0.461193
Target:  5'- gCCgCGGUCUccagcgccuccaGGGCGUCGGCGauGugAUGCa -3'
miRNA:   3'- -GG-GCCGGG------------CCUGCAGCCGC--CugUGCG- -5'
5395 5' -62.9 NC_001798.1 + 104160 0.68 0.560567
Target:  5'- gCCCcGCCUGGGCGUCcaggcacagGGCGGcCA-GCc -3'
miRNA:   3'- -GGGcCGGGCCUGCAG---------CCGCCuGUgCG- -5'
5395 5' -62.9 NC_001798.1 + 103018 0.68 0.560567
Target:  5'- gCCCGGCCagcgcgagcuCGG-CcUCGGCGGccuCGCGUc -3'
miRNA:   3'- -GGGCCGG----------GCCuGcAGCCGCCu--GUGCG- -5'
5395 5' -62.9 NC_001798.1 + 102507 0.66 0.67817
Target:  5'- gCCGGCgCCGGGguguccguaggccacCGUCcccGCGGccggcaggccGCACGCg -3'
miRNA:   3'- gGGCCG-GGCCU---------------GCAGc--CGCC----------UGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 102381 0.66 0.67817
Target:  5'- aCCC-GCCUGG-CgGUCGGCGGcgauggcccccaccaGCGCGg -3'
miRNA:   3'- -GGGcCGGGCCuG-CAGCCGCC---------------UGUGCg -5'
5395 5' -62.9 NC_001798.1 + 102215 0.67 0.626837
Target:  5'- gCCGGgagucgaCCGGGCG-CGGCucgGGGCGgGCc -3'
miRNA:   3'- gGGCCg------GGCCUGCaGCCG---CCUGUgCG- -5'
5395 5' -62.9 NC_001798.1 + 102095 0.69 0.505352
Target:  5'- -aCGGCCCguaggGGGCGUgGGUacGCGCGCg -3'
miRNA:   3'- ggGCCGGG-----CCUGCAgCCGccUGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 101741 0.66 0.683834
Target:  5'- -gCGGCCCGGGCcguGUCcacguucacGUGGGcCGCGCu -3'
miRNA:   3'- ggGCCGGGCCUG---CAGc--------CGCCU-GUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.