miRNA display CGI


Results 81 - 100 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5395 5' -62.9 NC_001798.1 + 106210 0.66 0.664909
Target:  5'- -aCGaGCCgGGucACG-CGGCuGACGCGCa -3'
miRNA:   3'- ggGC-CGGgCC--UGCaGCCGcCUGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 97515 0.66 0.664909
Target:  5'- cCCCGGgCCgccgcggaGGAgGgggGGCGGAgGCGUg -3'
miRNA:   3'- -GGGCCgGG--------CCUgCag-CCGCCUgUGCG- -5'
5395 5' -62.9 NC_001798.1 + 72149 0.66 0.664909
Target:  5'- aCCCGGgCCGG-CGUCgGGCccACgAUGCa -3'
miRNA:   3'- -GGGCCgGGCCuGCAG-CCGccUG-UGCG- -5'
5395 5' -62.9 NC_001798.1 + 72071 0.66 0.664909
Target:  5'- uUCGGCCUGGGCuaucuccccaccGUCGaG-GGGCACcGCa -3'
miRNA:   3'- gGGCCGGGCCUG------------CAGC-CgCCUGUG-CG- -5'
5395 5' -62.9 NC_001798.1 + 67112 0.66 0.664909
Target:  5'- uCCgCGGCCCcGACGuccuucUCGGCGccgccccuGGCAuCGCg -3'
miRNA:   3'- -GG-GCCGGGcCUGC------AGCCGC--------CUGU-GCG- -5'
5395 5' -62.9 NC_001798.1 + 83791 0.66 0.664909
Target:  5'- --gGGCCCGGACG-CGGggccCGGAacaACuGCa -3'
miRNA:   3'- gggCCGGGCCUGCaGCC----GCCUg--UG-CG- -5'
5395 5' -62.9 NC_001798.1 + 3312 0.66 0.664909
Target:  5'- -aCGGCaaCgGGGCGgcggcggCGGCGGGCuuccCGCg -3'
miRNA:   3'- ggGCCG--GgCCUGCa------GCCGCCUGu---GCG- -5'
5395 5' -62.9 NC_001798.1 + 63713 0.66 0.67344
Target:  5'- -aUGGCCgGGugGUUGaugguGCGGGCcacauagGCGCg -3'
miRNA:   3'- ggGCCGGgCCugCAGC-----CGCCUG-------UGCG- -5'
5395 5' -62.9 NC_001798.1 + 12026 0.66 0.674387
Target:  5'- gCCaCGG-CgGGGCGgCGG-GGGCAUGCg -3'
miRNA:   3'- -GG-GCCgGgCCUGCaGCCgCCUGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 93869 0.66 0.674387
Target:  5'- uCUCGGCCCuGAag-CGcGCGGACGgGUc -3'
miRNA:   3'- -GGGCCGGGcCUgcaGC-CGCCUGUgCG- -5'
5395 5' -62.9 NC_001798.1 + 101741 0.66 0.683834
Target:  5'- -gCGGCCCGGGCcguGUCcacguucacGUGGGcCGCGCu -3'
miRNA:   3'- ggGCCGGGCCUG---CAGc--------CGCCU-GUGCG- -5'
5395 5' -62.9 NC_001798.1 + 102507 0.66 0.67817
Target:  5'- gCCGGCgCCGGGguguccguaggccacCGUCcccGCGGccggcaggccGCACGCg -3'
miRNA:   3'- gGGCCG-GGCCU---------------GCAGc--CGCC----------UGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 102381 0.66 0.67817
Target:  5'- aCCC-GCCUGG-CgGUCGGCGGcgauggcccccaccaGCGCGg -3'
miRNA:   3'- -GGGcCGGGCCuG-CAGCCGCC---------------UGUGCg -5'
5395 5' -62.9 NC_001798.1 + 148905 0.66 0.674387
Target:  5'- cCCCGGCCCcccuGCG-CGGgGGAgcUGCa -3'
miRNA:   3'- -GGGCCGGGcc--UGCaGCCgCCUguGCG- -5'
5395 5' -62.9 NC_001798.1 + 27217 0.66 0.674387
Target:  5'- cCCCgGGgCgGGGCG-CGGgGGAgGCGg -3'
miRNA:   3'- -GGG-CCgGgCCUGCaGCCgCCUgUGCg -5'
5395 5' -62.9 NC_001798.1 + 79374 0.66 0.674387
Target:  5'- gCCGGCggCCaGACGggcGCGGGCGCGg -3'
miRNA:   3'- gGGCCG--GGcCUGCagcCGCCUGUGCg -5'
5395 5' -62.9 NC_001798.1 + 52034 0.66 0.674387
Target:  5'- aCUGGCCCGGgguGCG-CGcGCuccugGGGCGCGa -3'
miRNA:   3'- gGGCCGGGCC---UGCaGC-CG-----CCUGUGCg -5'
5395 5' -62.9 NC_001798.1 + 30750 0.66 0.674387
Target:  5'- cCCCGGaCCCGcGugGaggccgaGGCGGcCGUGCg -3'
miRNA:   3'- -GGGCC-GGGC-CugCag-----CCGCCuGUGCG- -5'
5395 5' -62.9 NC_001798.1 + 109103 0.66 0.674387
Target:  5'- gCUCGGCgCUGGACGcccucCGGCgGGugGCcgGCu -3'
miRNA:   3'- -GGGCCG-GGCCUGCa----GCCG-CCugUG--CG- -5'
5395 5' -62.9 NC_001798.1 + 97832 0.66 0.674387
Target:  5'- uUCUGcGCCCuGACGgCGggcGCGGGCACGg -3'
miRNA:   3'- -GGGC-CGGGcCUGCaGC---CGCCUGUGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.