Results 101 - 120 of 319 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5395 | 5' | -62.9 | NC_001798.1 | + | 51597 | 0.66 | 0.655409 |
Target: 5'- aCCCGuGUCCGGauagcGCGUUcgGGCuGuCGCGCg -3' miRNA: 3'- -GGGC-CGGGCC-----UGCAG--CCGcCuGUGCG- -5' |
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5395 | 5' | -62.9 | NC_001798.1 | + | 2702 | 0.66 | 0.655409 |
Target: 5'- gUCGGCCgCGGcgacggUGUCGGCcagcaGGGgGCGCa -3' miRNA: 3'- gGGCCGG-GCCu-----GCAGCCG-----CCUgUGCG- -5' |
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5395 | 5' | -62.9 | NC_001798.1 | + | 119419 | 0.66 | 0.655409 |
Target: 5'- uCCUGGCCCuGGCccCGGCGGuuCGgGUg -3' miRNA: 3'- -GGGCCGGGcCUGcaGCCGCCu-GUgCG- -5' |
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5395 | 5' | -62.9 | NC_001798.1 | + | 39674 | 0.66 | 0.6497 |
Target: 5'- cCCCGGcCCCGGcgGCGaccucgccgcccgccUCGG-GGAUGCGg -3' miRNA: 3'- -GGGCC-GGGCC--UGC---------------AGCCgCCUGUGCg -5' |
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5395 | 5' | -62.9 | NC_001798.1 | + | 149167 | 0.66 | 0.645892 |
Target: 5'- cCUCGG-CCGGugGUcCGGUGGGgG-GCg -3' miRNA: 3'- -GGGCCgGGCCugCA-GCCGCCUgUgCG- -5' |
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5395 | 5' | -62.9 | NC_001798.1 | + | 72071 | 0.66 | 0.664909 |
Target: 5'- uUCGGCCUGGGCuaucuccccaccGUCGaG-GGGCACcGCa -3' miRNA: 3'- gGGCCGGGCCUG------------CAGC-CgCCUGUG-CG- -5' |
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5395 | 5' | -62.9 | NC_001798.1 | + | 72149 | 0.66 | 0.664909 |
Target: 5'- aCCCGGgCCGG-CGUCgGGCccACgAUGCa -3' miRNA: 3'- -GGGCCgGGCCuGCAG-CCGccUG-UGCG- -5' |
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5395 | 5' | -62.9 | NC_001798.1 | + | 79374 | 0.66 | 0.674387 |
Target: 5'- gCCGGCggCCaGACGggcGCGGGCGCGg -3' miRNA: 3'- gGGCCG--GGcCUGCagcCGCCUGUGCg -5' |
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5395 | 5' | -62.9 | NC_001798.1 | + | 52034 | 0.66 | 0.674387 |
Target: 5'- aCUGGCCCGGgguGCG-CGcGCuccugGGGCGCGa -3' miRNA: 3'- gGGCCGGGCC---UGCaGC-CG-----CCUGUGCg -5' |
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5395 | 5' | -62.9 | NC_001798.1 | + | 30750 | 0.66 | 0.674387 |
Target: 5'- cCCCGGaCCCGcGugGaggccgaGGCGGcCGUGCg -3' miRNA: 3'- -GGGCC-GGGC-CugCag-----CCGCCuGUGCG- -5' |
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5395 | 5' | -62.9 | NC_001798.1 | + | 109103 | 0.66 | 0.674387 |
Target: 5'- gCUCGGCgCUGGACGcccucCGGCgGGugGCcgGCu -3' miRNA: 3'- -GGGCCG-GGCCUGCa----GCCG-CCugUG--CG- -5' |
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5395 | 5' | -62.9 | NC_001798.1 | + | 97832 | 0.66 | 0.674387 |
Target: 5'- uUCUGcGCCCuGACGgCGggcGCGGGCACGg -3' miRNA: 3'- -GGGC-CGGGcCUGCaGC---CGCCUGUGCg -5' |
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5395 | 5' | -62.9 | NC_001798.1 | + | 93869 | 0.66 | 0.674387 |
Target: 5'- uCUCGGCCCuGAag-CGcGCGGACGgGUc -3' miRNA: 3'- -GGGCCGGGcCUgcaGC-CGCCUGUgCG- -5' |
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5395 | 5' | -62.9 | NC_001798.1 | + | 12026 | 0.66 | 0.674387 |
Target: 5'- gCCaCGG-CgGGGCGgCGG-GGGCAUGCg -3' miRNA: 3'- -GG-GCCgGgCCUGCaGCCgCCUGUGCG- -5' |
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5395 | 5' | -62.9 | NC_001798.1 | + | 63713 | 0.66 | 0.67344 |
Target: 5'- -aUGGCCgGGugGUUGaugguGCGGGCcacauagGCGCg -3' miRNA: 3'- ggGCCGGgCCugCAGC-----CGCCUG-------UGCG- -5' |
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5395 | 5' | -62.9 | NC_001798.1 | + | 7057 | 0.66 | 0.67344 |
Target: 5'- cCCCGGCCCacccccaaaccccGGuuGg-GGCGGGCA-GCc -3' miRNA: 3'- -GGGCCGGG-------------CCugCagCCGCCUGUgCG- -5' |
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5395 | 5' | -62.9 | NC_001798.1 | + | 43697 | 0.66 | 0.671547 |
Target: 5'- -aCGGCCCGGagaugcguggccagGCG-CGGgGGGCugaaGCa -3' miRNA: 3'- ggGCCGGGCC--------------UGCaGCCgCCUGug--CG- -5' |
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5395 | 5' | -62.9 | NC_001798.1 | + | 115288 | 0.66 | 0.664909 |
Target: 5'- aCCCGGCCaUGGAgCGcuUCGcCGcGCACGCc -3' miRNA: 3'- -GGGCCGG-GCCU-GC--AGCcGCcUGUGCG- -5' |
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5395 | 5' | -62.9 | NC_001798.1 | + | 106210 | 0.66 | 0.664909 |
Target: 5'- -aCGaGCCgGGucACG-CGGCuGACGCGCa -3' miRNA: 3'- ggGC-CGGgCC--UGCaGCCGcCUGUGCG- -5' |
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5395 | 5' | -62.9 | NC_001798.1 | + | 97515 | 0.66 | 0.664909 |
Target: 5'- cCCCGGgCCgccgcggaGGAgGgggGGCGGAgGCGUg -3' miRNA: 3'- -GGGCCgGG--------CCUgCag-CCGCCUgUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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