miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5396 3' -56.3 NC_001798.1 + 70561 0.66 0.91267
Target:  5'- gCCgGgcUGCGCACcacggcGGCCCUGggGCc -3'
miRNA:   3'- -GGaCaaACGCGUGca----CCGGGACa-CGc -5'
5396 3' -56.3 NC_001798.1 + 83852 0.66 0.90666
Target:  5'- uCCgGgcgGCGCugGcgGGCCCgagGCGg -3'
miRNA:   3'- -GGaCaaaCGCGugCa-CCGGGacaCGC- -5'
5396 3' -56.3 NC_001798.1 + 25653 0.66 0.90666
Target:  5'- gCUGUccUGCcuGCugGcGGCCCUGgGCa -3'
miRNA:   3'- gGACAa-ACG--CGugCaCCGGGACaCGc -5'
5396 3' -56.3 NC_001798.1 + 19056 0.66 0.900418
Target:  5'- aCCUGUggGUGguCGgggcGGCggaCCUGUGUGu -3'
miRNA:   3'- -GGACAaaCGCguGCa---CCG---GGACACGC- -5'
5396 3' -56.3 NC_001798.1 + 80041 0.66 0.893945
Target:  5'- gCUGgucGCGCugGUGGCCg---GCGu -3'
miRNA:   3'- gGACaaaCGCGugCACCGGgacaCGC- -5'
5396 3' -56.3 NC_001798.1 + 26299 0.66 0.883119
Target:  5'- gCCUGggcGCGCcgcugcggcccgucuACGUGGCgCUGggGCGc -3'
miRNA:   3'- -GGACaaaCGCG---------------UGCACCGgGACa-CGC- -5'
5396 3' -56.3 NC_001798.1 + 126920 0.66 0.880324
Target:  5'- aCCUGgc-GCGCGcCGUGGUguuccugaacaCCagGUGCGg -3'
miRNA:   3'- -GGACaaaCGCGU-GCACCG-----------GGa-CACGC- -5'
5396 3' -56.3 NC_001798.1 + 98563 0.67 0.873184
Target:  5'- uCgUGgggGCGCugGUGGCCgCgGUGgCGu -3'
miRNA:   3'- -GgACaaaCGCGugCACCGG-GaCAC-GC- -5'
5396 3' -56.3 NC_001798.1 + 32438 0.67 0.873184
Target:  5'- ------aGCGU-CGUGGCCCUG-GCGc -3'
miRNA:   3'- ggacaaaCGCGuGCACCGGGACaCGC- -5'
5396 3' -56.3 NC_001798.1 + 117002 0.67 0.868796
Target:  5'- aCCUGgc-GCGCgACGUcccccugguccccccGGCCCUGgggGCc -3'
miRNA:   3'- -GGACaaaCGCG-UGCA---------------CCGGGACa--CGc -5'
5396 3' -56.3 NC_001798.1 + 154275 0.67 0.86583
Target:  5'- gCUGgcgUGCGCAgccCG-GGCCgUGUuGCGg -3'
miRNA:   3'- gGACaa-ACGCGU---GCaCCGGgACA-CGC- -5'
5396 3' -56.3 NC_001798.1 + 56761 0.67 0.85673
Target:  5'- gCUGgcaggugaagGUGCGCGgggGGCCCUG-GCc -3'
miRNA:   3'- gGACaaa-------CGCGUGCa--CCGGGACaCGc -5'
5396 3' -56.3 NC_001798.1 + 107198 0.67 0.850502
Target:  5'- gCCgUGUUgGCGUuCGUGGCCCUcaUGCc -3'
miRNA:   3'- -GG-ACAAaCGCGuGCACCGGGAc-ACGc -5'
5396 3' -56.3 NC_001798.1 + 70301 0.67 0.850502
Target:  5'- uUCUGUUgucggGCGCgGCGgucGGCCCg--GCGg -3'
miRNA:   3'- -GGACAAa----CGCG-UGCa--CCGGGacaCGC- -5'
5396 3' -56.3 NC_001798.1 + 61703 0.68 0.834392
Target:  5'- uCCUGgcc-CGCACGacGGCCCaGUGCc -3'
miRNA:   3'- -GGACaaacGCGUGCa-CCGGGaCACGc -5'
5396 3' -56.3 NC_001798.1 + 136999 0.68 0.834392
Target:  5'- gCCaGgcUGUGCACGUGGUCCUcGUugGCc -3'
miRNA:   3'- -GGaCaaACGCGUGCACCGGGA-CA--CGc -5'
5396 3' -56.3 NC_001798.1 + 116133 0.68 0.82606
Target:  5'- aCCUGgugGCcCACGUcgaGGCCCUG-GCc -3'
miRNA:   3'- -GGACaaaCGcGUGCA---CCGGGACaCGc -5'
5396 3' -56.3 NC_001798.1 + 116943 0.68 0.808881
Target:  5'- gCUGUUUGCGggcgccgacCACGUGGCCaac-GCGc -3'
miRNA:   3'- gGACAAACGC---------GUGCACCGGgacaCGC- -5'
5396 3' -56.3 NC_001798.1 + 107730 0.68 0.791067
Target:  5'- aCCUGgc-GCGCACGUuuGCCCgcgagGUGgGg -3'
miRNA:   3'- -GGACaaaCGCGUGCAc-CGGGa----CACgC- -5'
5396 3' -56.3 NC_001798.1 + 52193 0.69 0.734507
Target:  5'- uCCUGgacGUGCugGcGGUCCUG-GCGg -3'
miRNA:   3'- -GGACaaaCGCGugCaCCGGGACaCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.