miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5396 5' -53.5 NC_001798.1 + 102509 0.66 0.971455
Target:  5'- cGGCGCCggGGuguccguaGGCCAcCGUC-CCcGCg -3'
miRNA:   3'- -CCGCGGaaCC--------UUGGUaGCAGuGGaUG- -5'
5396 5' -53.5 NC_001798.1 + 77367 0.66 0.971455
Target:  5'- aGGCGCgg-GGGGCCAUCGacgaGCUcACg -3'
miRNA:   3'- -CCGCGgaaCCUUGGUAGCag--UGGaUG- -5'
5396 5' -53.5 NC_001798.1 + 79572 0.66 0.971455
Target:  5'- aGCGCUcUGGAucuGCCGUuCGcCACCaGCu -3'
miRNA:   3'- cCGCGGaACCU---UGGUA-GCaGUGGaUG- -5'
5396 5' -53.5 NC_001798.1 + 48106 0.66 0.970292
Target:  5'- cGGCGCCgUGGAccccccgggugGCCGgguucaacaagcgCGUCuuCUGCg -3'
miRNA:   3'- -CCGCGGaACCU-----------UGGUa------------GCAGugGAUG- -5'
5396 5' -53.5 NC_001798.1 + 131715 0.66 0.968484
Target:  5'- cGGUucGCUgagucagGGuuGCCGacuUCGUCACCUACu -3'
miRNA:   3'- -CCG--CGGaa-----CCu-UGGU---AGCAGUGGAUG- -5'
5396 5' -53.5 NC_001798.1 + 122026 0.66 0.968484
Target:  5'- gGGCGCCcUGGuccACCAggcCGUCAgCg-- -3'
miRNA:   3'- -CCGCGGaACCu--UGGUa--GCAGUgGaug -5'
5396 5' -53.5 NC_001798.1 + 95072 0.66 0.968484
Target:  5'- cGGCGCC-UGGAcguCCAU-GUUcgcgagcugcaACCUGCu -3'
miRNA:   3'- -CCGCGGaACCUu--GGUAgCAG-----------UGGAUG- -5'
5396 5' -53.5 NC_001798.1 + 12904 0.66 0.968484
Target:  5'- cGGgGgCUUGGGGCCGU-GcCACCcgGCg -3'
miRNA:   3'- -CCgCgGAACCUUGGUAgCaGUGGa-UG- -5'
5396 5' -53.5 NC_001798.1 + 55492 0.66 0.961896
Target:  5'- aGGCGagaagcGGGACCGUCGgacgcgCGCCUcACg -3'
miRNA:   3'- -CCGCggaa--CCUUGGUAGCa-----GUGGA-UG- -5'
5396 5' -53.5 NC_001798.1 + 24460 0.66 0.961896
Target:  5'- cGGCGCCgcggGGGugC-UCGcCGCCcugggGCg -3'
miRNA:   3'- -CCGCGGaa--CCUugGuAGCaGUGGa----UG- -5'
5396 5' -53.5 NC_001798.1 + 57472 0.66 0.961896
Target:  5'- cGGgGCCgguuuggcggUGGAgGCCuuacuuuUCGUCGCCuUGCg -3'
miRNA:   3'- -CCgCGGa---------ACCU-UGGu------AGCAGUGG-AUG- -5'
5396 5' -53.5 NC_001798.1 + 150680 0.66 0.958267
Target:  5'- cGGCGUCUUcGcccACCcgCG-CGCCUGCg -3'
miRNA:   3'- -CCGCGGAAcCu--UGGuaGCaGUGGAUG- -5'
5396 5' -53.5 NC_001798.1 + 139120 0.66 0.957892
Target:  5'- uGGCGUUgaGGAGCgCGuggaagaUCGcCGCCUGCa -3'
miRNA:   3'- -CCGCGGaaCCUUG-GU-------AGCaGUGGAUG- -5'
5396 5' -53.5 NC_001798.1 + 12599 0.67 0.950315
Target:  5'- aGGCGCUUgGGGGCCAUCugagCGCg-GCg -3'
miRNA:   3'- -CCGCGGAaCCUUGGUAGca--GUGgaUG- -5'
5396 5' -53.5 NC_001798.1 + 39400 0.67 0.949893
Target:  5'- gGGCGCCUUucgcuccGGGACCGgggcgcggcCGUcCGCgUGCg -3'
miRNA:   3'- -CCGCGGAA-------CCUUGGUa--------GCA-GUGgAUG- -5'
5396 5' -53.5 NC_001798.1 + 113359 0.67 0.945984
Target:  5'- uGGCGCCggcaUGuauuauagccGCCGUCcUCGCCUACu -3'
miRNA:   3'- -CCGCGGa---ACcu--------UGGUAGcAGUGGAUG- -5'
5396 5' -53.5 NC_001798.1 + 25800 0.67 0.945984
Target:  5'- cGGCGCCguggaguuccUGGGGCUGcUGgccggCGCCUGCg -3'
miRNA:   3'- -CCGCGGa---------ACCUUGGUaGCa----GUGGAUG- -5'
5396 5' -53.5 NC_001798.1 + 115244 0.67 0.945984
Target:  5'- gGGCGCCaUGGA-CCugaCGUUcguCCUGCc -3'
miRNA:   3'- -CCGCGGaACCUuGGua-GCAGu--GGAUG- -5'
5396 5' -53.5 NC_001798.1 + 86440 0.67 0.938552
Target:  5'- aGGCGCagcccggggacgGGGGCCGguUCGUgaGCCUGCu -3'
miRNA:   3'- -CCGCGgaa---------CCUUGGU--AGCAg-UGGAUG- -5'
5396 5' -53.5 NC_001798.1 + 134616 0.67 0.936596
Target:  5'- gGGCGCCUUcGcGGACCugGUCGaggugugcgaggUCgGCCUGCg -3'
miRNA:   3'- -CCGCGGAA-C-CUUGG--UAGC------------AG-UGGAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.