miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5397 3' -57.1 NC_001798.1 + 86723 0.66 0.846343
Target:  5'- --cGCGCUggcCACAUuuguccgcgaggccgGCGCGCUGCUCa- -3'
miRNA:   3'- cucCGCGA---GUGUG---------------UGUGCGACGAGag -5'
5397 3' -57.1 NC_001798.1 + 90706 0.66 0.843102
Target:  5'- cAGGCGCUCGCAgagauCGCGCGggGCa--- -3'
miRNA:   3'- cUCCGCGAGUGU-----GUGUGCgaCGagag -5'
5397 3' -57.1 NC_001798.1 + 80921 0.66 0.834865
Target:  5'- -cGGCGCUCAuCGCcgaGCGCc-CUCUCg -3'
miRNA:   3'- cuCCGCGAGU-GUGug-UGCGacGAGAG- -5'
5397 3' -57.1 NC_001798.1 + 46321 0.66 0.817838
Target:  5'- cGGGCGCcucgugCACGCAguCGCcgUGCUCg- -3'
miRNA:   3'- cUCCGCGa-----GUGUGUguGCG--ACGAGag -5'
5397 3' -57.1 NC_001798.1 + 79393 0.66 0.817838
Target:  5'- cGGGCGCggagucCGCGCcCGCGCcccUGCUCg- -3'
miRNA:   3'- cUCCGCGa-----GUGUGuGUGCG---ACGAGag -5'
5397 3' -57.1 NC_001798.1 + 97445 0.66 0.817838
Target:  5'- gGAGGCGCUgCGCcgcguGCugGCGCgGCUg-- -3'
miRNA:   3'- -CUCCGCGA-GUG-----UGugUGCGaCGAgag -5'
5397 3' -57.1 NC_001798.1 + 134011 0.66 0.817838
Target:  5'- -uGGCuGCccccgCGCACGCGCGaCUGC-CUCc -3'
miRNA:   3'- cuCCG-CGa----GUGUGUGUGC-GACGaGAG- -5'
5397 3' -57.1 NC_001798.1 + 139334 0.66 0.817838
Target:  5'- -cGGCGC-C-CGCGCGCGCUGUg--- -3'
miRNA:   3'- cuCCGCGaGuGUGUGUGCGACGagag -5'
5397 3' -57.1 NC_001798.1 + 60009 0.67 0.809064
Target:  5'- -uGGCGgUgACACACACGCUGg---- -3'
miRNA:   3'- cuCCGCgAgUGUGUGUGCGACgagag -5'
5397 3' -57.1 NC_001798.1 + 76534 0.67 0.800127
Target:  5'- -cGGCGCUCGCGCAgCA-GCUGgaCa- -3'
miRNA:   3'- cuCCGCGAGUGUGU-GUgCGACgaGag -5'
5397 3' -57.1 NC_001798.1 + 25745 0.67 0.791037
Target:  5'- -cGGCGCUgGgCGCGCAgggcgugcUGCUGCUgUCc -3'
miRNA:   3'- cuCCGCGAgU-GUGUGU--------GCGACGAgAG- -5'
5397 3' -57.1 NC_001798.1 + 10625 0.67 0.781801
Target:  5'- cGGGGCGC--GCAUGCACGCcGCauccacgaccgUCUCg -3'
miRNA:   3'- -CUCCGCGagUGUGUGUGCGaCG-----------AGAG- -5'
5397 3' -57.1 NC_001798.1 + 48871 0.67 0.780869
Target:  5'- cGGGCGCUCGgGCACGucucauuCGC--CUCUCg -3'
miRNA:   3'- cUCCGCGAGUgUGUGU-------GCGacGAGAG- -5'
5397 3' -57.1 NC_001798.1 + 102105 0.67 0.762929
Target:  5'- gGGGGCGUgggUACGCGCGCGCaugUGCgccagUUCc -3'
miRNA:   3'- -CUCCGCGa--GUGUGUGUGCG---ACGa----GAG- -5'
5397 3' -57.1 NC_001798.1 + 52362 0.67 0.760056
Target:  5'- cGAGGCGCUgggcgacaccgcggCGCGC-CGC-CUGCUCg- -3'
miRNA:   3'- -CUCCGCGA--------------GUGUGuGUGcGACGAGag -5'
5397 3' -57.1 NC_001798.1 + 39795 0.68 0.753312
Target:  5'- cGAGGCGCgacCACACGC-CGgUGgUCg- -3'
miRNA:   3'- -CUCCGCGa--GUGUGUGuGCgACgAGag -5'
5397 3' -57.1 NC_001798.1 + 103296 0.68 0.753312
Target:  5'- -cGGCGCUCAaaaauagcgGCGCugGCgGCcgUCUCg -3'
miRNA:   3'- cuCCGCGAGUg--------UGUGugCGaCG--AGAG- -5'
5397 3' -57.1 NC_001798.1 + 34502 0.68 0.72385
Target:  5'- -cGGCGUUCGagGgGCGCGCU-CUCUCa -3'
miRNA:   3'- cuCCGCGAGUg-UgUGUGCGAcGAGAG- -5'
5397 3' -57.1 NC_001798.1 + 3434 0.68 0.72385
Target:  5'- aGGGGCGCguaggCGCgGCGCAgGCUGgUCa- -3'
miRNA:   3'- -CUCCGCGa----GUG-UGUGUgCGACgAGag -5'
5397 3' -57.1 NC_001798.1 + 78567 0.68 0.713857
Target:  5'- gGAGGCGCUgGC-CGCGCGCgaGCg--- -3'
miRNA:   3'- -CUCCGCGAgUGuGUGUGCGa-CGagag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.