miRNA display CGI


Results 21 - 40 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5397 3' -57.1 NC_001798.1 + 103296 0.68 0.753312
Target:  5'- -cGGCGCUCAaaaauagcgGCGCugGCgGCcgUCUCg -3'
miRNA:   3'- cuCCGCGAGUg--------UGUGugCGaCG--AGAG- -5'
5397 3' -57.1 NC_001798.1 + 150809 0.69 0.652736
Target:  5'- cGGGGCGC-CGC-CGC-UGCUGCUgCUCc -3'
miRNA:   3'- -CUCCGCGaGUGuGUGuGCGACGA-GAG- -5'
5397 3' -57.1 NC_001798.1 + 77798 0.69 0.663015
Target:  5'- cAGGCGCUgGCGgGCACGCacgGCUa-- -3'
miRNA:   3'- cUCCGCGAgUGUgUGUGCGa--CGAgag -5'
5397 3' -57.1 NC_001798.1 + 133765 0.69 0.68349
Target:  5'- gGGGGCGCUgcuugCGCACGCACGCcuccgGCg--- -3'
miRNA:   3'- -CUCCGCGA-----GUGUGUGUGCGa----CGagag -5'
5397 3' -57.1 NC_001798.1 + 93289 0.69 0.693668
Target:  5'- cGGGGCGUacCugGCGCGCGCcGCgggcCUCg -3'
miRNA:   3'- -CUCCGCGa-GugUGUGUGCGaCGa---GAG- -5'
5397 3' -57.1 NC_001798.1 + 26375 0.69 0.69975
Target:  5'- cGGGcCGCggcgggaguucugCGCGCGgGCGCUGCUCg- -3'
miRNA:   3'- cUCC-GCGa------------GUGUGUgUGCGACGAGag -5'
5397 3' -57.1 NC_001798.1 + 20169 0.69 0.703793
Target:  5'- aGGGCaGCUCGCACACGgGCUcggcgGCgggUUCa -3'
miRNA:   3'- cUCCG-CGAGUGUGUGUgCGA-----CGa--GAG- -5'
5397 3' -57.1 NC_001798.1 + 26264 0.7 0.611534
Target:  5'- cGAGGCGCacUCGCAC-CGCGcCUGCgcgcgCUg -3'
miRNA:   3'- -CUCCGCG--AGUGUGuGUGC-GACGa----GAg -5'
5397 3' -57.1 NC_001798.1 + 9650 0.7 0.621831
Target:  5'- cGAGGCGCagcgggcCGCGCGCggaggGCGCgggaugggggGCUCUCa -3'
miRNA:   3'- -CUCCGCGa------GUGUGUG-----UGCGa---------CGAGAG- -5'
5397 3' -57.1 NC_001798.1 + 133038 0.7 0.632135
Target:  5'- cGAGGUGgUCGCGCuCAUGCgcgGC-CUCa -3'
miRNA:   3'- -CUCCGCgAGUGUGuGUGCGa--CGaGAG- -5'
5397 3' -57.1 NC_001798.1 + 88233 0.7 0.64244
Target:  5'- cAGGCGCUUguugguguACGCGCGCGgguguCUGCUCa- -3'
miRNA:   3'- cUCCGCGAG--------UGUGUGUGC-----GACGAGag -5'
5397 3' -57.1 NC_001798.1 + 69066 0.71 0.540298
Target:  5'- aAGGC-C-CGCGCGCGCGCagccGCUCUCg -3'
miRNA:   3'- cUCCGcGaGUGUGUGUGCGa---CGAGAG- -5'
5397 3' -57.1 NC_001798.1 + 119372 0.71 0.540298
Target:  5'- cGAGGCGCUggucgccuggCugGCGCACGCggGCcaaCUCg -3'
miRNA:   3'- -CUCCGCGA----------GugUGUGUGCGa-CGa--GAG- -5'
5397 3' -57.1 NC_001798.1 + 71560 0.71 0.560432
Target:  5'- aGGGCGCcagcgagCACACGCACGggcgGCUCUg -3'
miRNA:   3'- cUCCGCGa------GUGUGUGUGCga--CGAGAg -5'
5397 3' -57.1 NC_001798.1 + 82092 0.71 0.570578
Target:  5'- -cGGCGcCUCACGCGCccCGCggucgccucGCUCUCg -3'
miRNA:   3'- cuCCGC-GAGUGUGUGu-GCGa--------CGAGAG- -5'
5397 3' -57.1 NC_001798.1 + 149420 0.72 0.510578
Target:  5'- gGGGGC-CUCACGCaguuGCGCGCgUGCUCg- -3'
miRNA:   3'- -CUCCGcGAGUGUG----UGUGCG-ACGAGag -5'
5397 3' -57.1 NC_001798.1 + 132553 0.72 0.504714
Target:  5'- cGGGGCGCgcucggagcccgucuUUACGCcCAUGCUGCUCa- -3'
miRNA:   3'- -CUCCGCG---------------AGUGUGuGUGCGACGAGag -5'
5397 3' -57.1 NC_001798.1 + 97361 0.73 0.472067
Target:  5'- cGAGGCGCUgAUACGCGCG-UGCUa-- -3'
miRNA:   3'- -CUCCGCGAgUGUGUGUGCgACGAgag -5'
5397 3' -57.1 NC_001798.1 + 66548 0.74 0.386242
Target:  5'- gGGGGCGCU-GCcgaagguucguggggGCACGCGCuUGCUCUCc -3'
miRNA:   3'- -CUCCGCGAgUG---------------UGUGUGCG-ACGAGAG- -5'
5397 3' -57.1 NC_001798.1 + 116847 0.76 0.291709
Target:  5'- cGGGGCGCUgCACGCcgGCGUGCUGCUCa- -3'
miRNA:   3'- -CUCCGCGA-GUGUG--UGUGCGACGAGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.