miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5397 3' -57.1 NC_001798.1 + 3434 0.68 0.72385
Target:  5'- aGGGGCGCguaggCGCgGCGCAgGCUGgUCa- -3'
miRNA:   3'- -CUCCGCGa----GUG-UGUGUgCGACgAGag -5'
5397 3' -57.1 NC_001798.1 + 9650 0.7 0.621831
Target:  5'- cGAGGCGCagcgggcCGCGCGCggaggGCGCgggaugggggGCUCUCa -3'
miRNA:   3'- -CUCCGCGa------GUGUGUG-----UGCGa---------CGAGAG- -5'
5397 3' -57.1 NC_001798.1 + 10625 0.67 0.781801
Target:  5'- cGGGGCGC--GCAUGCACGCcGCauccacgaccgUCUCg -3'
miRNA:   3'- -CUCCGCGagUGUGUGUGCGaCG-----------AGAG- -5'
5397 3' -57.1 NC_001798.1 + 20169 0.69 0.703793
Target:  5'- aGGGCaGCUCGCACACGgGCUcggcgGCgggUUCa -3'
miRNA:   3'- cUCCG-CGAGUGUGUGUgCGA-----CGa--GAG- -5'
5397 3' -57.1 NC_001798.1 + 25745 0.67 0.791037
Target:  5'- -cGGCGCUgGgCGCGCAgggcgugcUGCUGCUgUCc -3'
miRNA:   3'- cuCCGCGAgU-GUGUGU--------GCGACGAgAG- -5'
5397 3' -57.1 NC_001798.1 + 26264 0.7 0.611534
Target:  5'- cGAGGCGCacUCGCAC-CGCGcCUGCgcgcgCUg -3'
miRNA:   3'- -CUCCGCG--AGUGUGuGUGC-GACGa----GAg -5'
5397 3' -57.1 NC_001798.1 + 26375 0.69 0.69975
Target:  5'- cGGGcCGCggcgggaguucugCGCGCGgGCGCUGCUCg- -3'
miRNA:   3'- cUCC-GCGa------------GUGUGUgUGCGACGAGag -5'
5397 3' -57.1 NC_001798.1 + 34502 0.68 0.72385
Target:  5'- -cGGCGUUCGagGgGCGCGCU-CUCUCa -3'
miRNA:   3'- cuCCGCGAGUg-UgUGUGCGAcGAGAG- -5'
5397 3' -57.1 NC_001798.1 + 39795 0.68 0.753312
Target:  5'- cGAGGCGCgacCACACGC-CGgUGgUCg- -3'
miRNA:   3'- -CUCCGCGa--GUGUGUGuGCgACgAGag -5'
5397 3' -57.1 NC_001798.1 + 46321 0.66 0.817838
Target:  5'- cGGGCGCcucgugCACGCAguCGCcgUGCUCg- -3'
miRNA:   3'- cUCCGCGa-----GUGUGUguGCG--ACGAGag -5'
5397 3' -57.1 NC_001798.1 + 48871 0.67 0.780869
Target:  5'- cGGGCGCUCGgGCACGucucauuCGC--CUCUCg -3'
miRNA:   3'- cUCCGCGAGUgUGUGU-------GCGacGAGAG- -5'
5397 3' -57.1 NC_001798.1 + 52362 0.67 0.760056
Target:  5'- cGAGGCGCUgggcgacaccgcggCGCGC-CGC-CUGCUCg- -3'
miRNA:   3'- -CUCCGCGA--------------GUGUGuGUGcGACGAGag -5'
5397 3' -57.1 NC_001798.1 + 60009 0.67 0.809064
Target:  5'- -uGGCGgUgACACACACGCUGg---- -3'
miRNA:   3'- cuCCGCgAgUGUGUGUGCGACgagag -5'
5397 3' -57.1 NC_001798.1 + 66548 0.74 0.386242
Target:  5'- gGGGGCGCU-GCcgaagguucguggggGCACGCGCuUGCUCUCc -3'
miRNA:   3'- -CUCCGCGAgUG---------------UGUGUGCG-ACGAGAG- -5'
5397 3' -57.1 NC_001798.1 + 69066 0.71 0.540298
Target:  5'- aAGGC-C-CGCGCGCGCGCagccGCUCUCg -3'
miRNA:   3'- cUCCGcGaGUGUGUGUGCGa---CGAGAG- -5'
5397 3' -57.1 NC_001798.1 + 71560 0.71 0.560432
Target:  5'- aGGGCGCcagcgagCACACGCACGggcgGCUCUg -3'
miRNA:   3'- cUCCGCGa------GUGUGUGUGCga--CGAGAg -5'
5397 3' -57.1 NC_001798.1 + 76534 0.67 0.800127
Target:  5'- -cGGCGCUCGCGCAgCA-GCUGgaCa- -3'
miRNA:   3'- cuCCGCGAGUGUGU-GUgCGACgaGag -5'
5397 3' -57.1 NC_001798.1 + 77798 0.69 0.663015
Target:  5'- cAGGCGCUgGCGgGCACGCacgGCUa-- -3'
miRNA:   3'- cUCCGCGAgUGUgUGUGCGa--CGAgag -5'
5397 3' -57.1 NC_001798.1 + 78567 0.68 0.713857
Target:  5'- gGAGGCGCUgGC-CGCGCGCgaGCg--- -3'
miRNA:   3'- -CUCCGCGAgUGuGUGUGCGa-CGagag -5'
5397 3' -57.1 NC_001798.1 + 79393 0.66 0.817838
Target:  5'- cGGGCGCggagucCGCGCcCGCGCcccUGCUCg- -3'
miRNA:   3'- cUCCGCGa-----GUGUGuGUGCG---ACGAGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.