miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5397 5' -49.6 NC_001798.1 + 138478 0.66 0.998137
Target:  5'- -aGACGGCAgauGUGCgcguguucccggaggGCGUGGCaCGCg -3'
miRNA:   3'- agUUGUUGUac-UACGa--------------CGCACUG-GCG- -5'
5397 5' -49.6 NC_001798.1 + 27240 0.66 0.998102
Target:  5'- gCGGCcGCGgggGAggcgGCcGCGgGACCGCa -3'
miRNA:   3'- aGUUGuUGUa--CUa---CGaCGCaCUGGCG- -5'
5397 5' -49.6 NC_001798.1 + 151211 0.66 0.998102
Target:  5'- cCAGCGACAggGA-GC-GCGgGGCCGUc -3'
miRNA:   3'- aGUUGUUGUa-CUaCGaCGCaCUGGCG- -5'
5397 5' -49.6 NC_001798.1 + 95227 0.66 0.998102
Target:  5'- gCGGCAaaaacGCGUGcccGCUGCugaucuuUGACCGCa -3'
miRNA:   3'- aGUUGU-----UGUACua-CGACGc------ACUGGCG- -5'
5397 5' -49.6 NC_001798.1 + 44342 0.66 0.998102
Target:  5'- ---cCAugAUGAUGUUaGCGUGGagCGCa -3'
miRNA:   3'- aguuGUugUACUACGA-CGCACUg-GCG- -5'
5397 5' -49.6 NC_001798.1 + 44945 0.66 0.997728
Target:  5'- aCAACAAUAUGAgaUGauuCG-GGCCGCg -3'
miRNA:   3'- aGUUGUUGUACU--ACgacGCaCUGGCG- -5'
5397 5' -49.6 NC_001798.1 + 130773 0.66 0.997728
Target:  5'- cCGACGAUAcGAUGgUGCGUcGgCGCc -3'
miRNA:   3'- aGUUGUUGUaCUACgACGCAcUgGCG- -5'
5397 5' -49.6 NC_001798.1 + 53433 0.66 0.997728
Target:  5'- cUCGGCGAgGUGGaGCUGuCG-GGCgGCc -3'
miRNA:   3'- -AGUUGUUgUACUaCGAC-GCaCUGgCG- -5'
5397 5' -49.6 NC_001798.1 + 135448 0.66 0.997728
Target:  5'- gCGGCGGCAccGggGCUGCGUucugggGGCUGUu -3'
miRNA:   3'- aGUUGUUGUa-CuaCGACGCA------CUGGCG- -5'
5397 5' -49.6 NC_001798.1 + 149452 0.66 0.997728
Target:  5'- -gAGCAGgGUGcgGCggcuccacGCGggGGCCGCg -3'
miRNA:   3'- agUUGUUgUACuaCGa-------CGCa-CUGGCG- -5'
5397 5' -49.6 NC_001798.1 + 132590 0.66 0.997647
Target:  5'- cUCAACcACGUGGUGagcgccagcggGCaGUGGCCGg -3'
miRNA:   3'- -AGUUGuUGUACUACga---------CG-CACUGGCg -5'
5397 5' -49.6 NC_001798.1 + 131101 0.66 0.997295
Target:  5'- gCAACAGCGUaGAcguaauUGCguaCGUGGCCaGCa -3'
miRNA:   3'- aGUUGUUGUA-CU------ACGac-GCACUGG-CG- -5'
5397 5' -49.6 NC_001798.1 + 36282 0.66 0.997295
Target:  5'- -gGGCGGCGggggggGGUGCcguggGUGUGGCgGCg -3'
miRNA:   3'- agUUGUUGUa-----CUACGa----CGCACUGgCG- -5'
5397 5' -49.6 NC_001798.1 + 131562 0.66 0.996795
Target:  5'- cCGACGGCccGGUGCguaacUGUGGuCCGCg -3'
miRNA:   3'- aGUUGUUGuaCUACGac---GCACU-GGCG- -5'
5397 5' -49.6 NC_001798.1 + 81590 0.66 0.996795
Target:  5'- cUCAACAaaACAcGggGC-GCGUGcCCGUg -3'
miRNA:   3'- -AGUUGU--UGUaCuaCGaCGCACuGGCG- -5'
5397 5' -49.6 NC_001798.1 + 19747 0.66 0.996795
Target:  5'- cUCAugG-CcgGAgaaaUGUGUGGCCGCa -3'
miRNA:   3'- -AGUugUuGuaCUacg-ACGCACUGGCG- -5'
5397 5' -49.6 NC_001798.1 + 128551 0.66 0.99622
Target:  5'- cCGACGGCccGAaaccUGCuguuucgcuacUGCGUgGGCCGCg -3'
miRNA:   3'- aGUUGUUGuaCU----ACG-----------ACGCA-CUGGCG- -5'
5397 5' -49.6 NC_001798.1 + 41640 0.66 0.996158
Target:  5'- -uGACGGuCGUGAggUGCUggagggaGCG-GACCGCg -3'
miRNA:   3'- agUUGUU-GUACU--ACGA-------CGCaCUGGCG- -5'
5397 5' -49.6 NC_001798.1 + 24126 0.67 0.995564
Target:  5'- cCGGCAGCGUG--GC-GCG-GGCCGUg -3'
miRNA:   3'- aGUUGUUGUACuaCGaCGCaCUGGCG- -5'
5397 5' -49.6 NC_001798.1 + 9967 0.67 0.995564
Target:  5'- -gAACAGCcgGcGUaCUGCG-GACCGCc -3'
miRNA:   3'- agUUGUUGuaC-UAcGACGCaCUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.