miRNA display CGI


Results 21 - 40 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5398 3' -54.2 NC_001798.1 + 43670 0.66 0.95148
Target:  5'- gCCgcgGgGCUGGGGuCGUGGGUGg----- -3'
miRNA:   3'- -GGa--CgCGGCCUC-GCGCCCAUauuuug -5'
5398 3' -54.2 NC_001798.1 + 97451 0.66 0.947241
Target:  5'- gCUGCGCCGcGugcuGGCGCGGcug-GGGGCc -3'
miRNA:   3'- gGACGCGGC-C----UCGCGCCcauaUUUUG- -5'
5398 3' -54.2 NC_001798.1 + 61460 0.66 0.947241
Target:  5'- --aGCGCCGGGGCcucCGGGccccggAGGGCu -3'
miRNA:   3'- ggaCGCGGCCUCGc--GCCCaua---UUUUG- -5'
5398 3' -54.2 NC_001798.1 + 42812 0.66 0.947241
Target:  5'- --gGCGUCGGGGUcuacGCGGGccgcggGAAACa -3'
miRNA:   3'- ggaCGCGGCCUCG----CGCCCaua---UUUUG- -5'
5398 3' -54.2 NC_001798.1 + 43013 0.66 0.942764
Target:  5'- gCCagGcCGCCcggggGGAGCGCGGGgccccGGGCg -3'
miRNA:   3'- -GGa-C-GCGG-----CCUCGCGCCCauau-UUUG- -5'
5398 3' -54.2 NC_001798.1 + 4218 0.66 0.942764
Target:  5'- gCUG-GCgGGGGCGCGGGc------- -3'
miRNA:   3'- gGACgCGgCCUCGCGCCCauauuuug -5'
5398 3' -54.2 NC_001798.1 + 11779 0.66 0.942764
Target:  5'- gCUGCGCCGGAuCGCaGGa------- -3'
miRNA:   3'- gGACGCGGCCUcGCGcCCauauuuug -5'
5398 3' -54.2 NC_001798.1 + 29008 0.66 0.942764
Target:  5'- aCCgcGCGCCGccGCGCGGGccc-GGACu -3'
miRNA:   3'- -GGa-CGCGGCcuCGCGCCCauauUUUG- -5'
5398 3' -54.2 NC_001798.1 + 7012 0.67 0.938047
Target:  5'- --cGCGCCGGcGCuuaGGGUGUGAc-- -3'
miRNA:   3'- ggaCGCGGCCuCGcg-CCCAUAUUuug -5'
5398 3' -54.2 NC_001798.1 + 31144 0.67 0.938047
Target:  5'- cCCgGCGCgGGGGCGgCGGugcgGGGGCg -3'
miRNA:   3'- -GGaCGCGgCCUCGC-GCCcauaUUUUG- -5'
5398 3' -54.2 NC_001798.1 + 72911 0.67 0.938047
Target:  5'- gCCUGCagaCGGAGCGCGcgcuGGUcGUGGcGCg -3'
miRNA:   3'- -GGACGcg-GCCUCGCGC----CCA-UAUUuUG- -5'
5398 3' -54.2 NC_001798.1 + 2260 0.67 0.933088
Target:  5'- --cGcCGCCGGGGgGCGGGgc---GGCg -3'
miRNA:   3'- ggaC-GCGGCCUCgCGCCCauauuUUG- -5'
5398 3' -54.2 NC_001798.1 + 22399 0.67 0.933088
Target:  5'- cCCgGCgaGCCGGGGCGCGGcGg------- -3'
miRNA:   3'- -GGaCG--CGGCCUCGCGCC-Cauauuuug -5'
5398 3' -54.2 NC_001798.1 + 29401 0.67 0.933088
Target:  5'- gCC-GCGCCGGcggGGCGCcGGGg---GGACu -3'
miRNA:   3'- -GGaCGCGGCC---UCGCG-CCCauauUUUG- -5'
5398 3' -54.2 NC_001798.1 + 111326 0.67 0.933088
Target:  5'- aCCgacgaGCCGcacGAGCGCGGGgaaggGGGACa -3'
miRNA:   3'- -GGacg--CGGC---CUCGCGCCCaua--UUUUG- -5'
5398 3' -54.2 NC_001798.1 + 154179 0.67 0.933088
Target:  5'- cCCggaGCCGGAGCGCgucGGGgcggGAGAg -3'
miRNA:   3'- -GGacgCGGCCUCGCG---CCCaua-UUUUg -5'
5398 3' -54.2 NC_001798.1 + 2635 0.67 0.933088
Target:  5'- cCCUG-GCCGGGGCG-GGGcucuu-GCg -3'
miRNA:   3'- -GGACgCGGCCUCGCgCCCauauuuUG- -5'
5398 3' -54.2 NC_001798.1 + 40125 0.67 0.932579
Target:  5'- --gGuCGCCGGGGCugggaugGCGGGUGUccuccgagGGGGCg -3'
miRNA:   3'- ggaC-GCGGCCUCG-------CGCCCAUA--------UUUUG- -5'
5398 3' -54.2 NC_001798.1 + 54572 0.67 0.927887
Target:  5'- cCCUGCGCCGGccGGC-CGGccacGUAuuACa -3'
miRNA:   3'- -GGACGCGGCC--UCGcGCCca--UAUuuUG- -5'
5398 3' -54.2 NC_001798.1 + 97832 0.67 0.927887
Target:  5'- uUCUGCGCCcugacggcGGGCGCGGGc------- -3'
miRNA:   3'- -GGACGCGGc-------CUCGCGCCCauauuuug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.