miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5398 5' -60 NC_001798.1 + 31549 0.66 0.74015
Target:  5'- gGGGaggucUGCCAcagucgucgGGGCGCGccgcgcgCCCCCGCgCGg -3'
miRNA:   3'- -CCC-----ACGGUa--------CCUGUGUa------GGGGGCG-GC- -5'
5398 5' -60 NC_001798.1 + 48384 0.66 0.74015
Target:  5'- gGGcGUGCCGccgcgaccGCACGggCCCCCGCCc -3'
miRNA:   3'- -CC-CACGGUacc-----UGUGUa-GGGGGCGGc -5'
5398 5' -60 NC_001798.1 + 149336 0.66 0.739209
Target:  5'- aGGGUGCCcUGGucaaagaGCAUGUUgCCCaCCGg -3'
miRNA:   3'- -CCCACGGuACC-------UGUGUAGgGGGcGGC- -5'
5398 5' -60 NC_001798.1 + 123986 0.66 0.737323
Target:  5'- uGG-GCCAUGGAugaugaccugggguCGCucuGUCCCCCgggcaGCCGg -3'
miRNA:   3'- cCCaCGGUACCU--------------GUG---UAGGGGG-----CGGC- -5'
5398 5' -60 NC_001798.1 + 132149 0.67 0.721159
Target:  5'- cGGGgGCCGgcGGGCGgGgcgCCCCCcCCGg -3'
miRNA:   3'- -CCCaCGGUa-CCUGUgUa--GGGGGcGGC- -5'
5398 5' -60 NC_001798.1 + 54813 0.67 0.721159
Target:  5'- cGGGcGUCGggcuUGG-CGCcaCCCCCGCCGc -3'
miRNA:   3'- -CCCaCGGU----ACCuGUGuaGGGGGCGGC- -5'
5398 5' -60 NC_001798.1 + 31688 0.67 0.721159
Target:  5'- -cGUGCCgGUGGACGCGcaccgcgcgCCCCgGUCGc -3'
miRNA:   3'- ccCACGG-UACCUGUGUa--------GGGGgCGGC- -5'
5398 5' -60 NC_001798.1 + 40825 0.67 0.720202
Target:  5'- uGGGgGCCGcUGGuucCGCGUUuuugggggccgagCCCCGCCGc -3'
miRNA:   3'- -CCCaCGGU-ACCu--GUGUAG-------------GGGGCGGC- -5'
5398 5' -60 NC_001798.1 + 133179 0.67 0.711552
Target:  5'- ---cGCCAcGGGCGuCAUCCCcacgaucaacgCCGCCGg -3'
miRNA:   3'- cccaCGGUaCCUGU-GUAGGG-----------GGCGGC- -5'
5398 5' -60 NC_001798.1 + 32777 0.67 0.711552
Target:  5'- cGGGaGCa--GGGCGCG-CCCgCGCCGg -3'
miRNA:   3'- -CCCaCGguaCCUGUGUaGGGgGCGGC- -5'
5398 5' -60 NC_001798.1 + 110293 0.67 0.711552
Target:  5'- uGGGgGCCGUGuuucuGCGCuacaCCCCgGCCGg -3'
miRNA:   3'- -CCCaCGGUACc----UGUGua--GGGGgCGGC- -5'
5398 5' -60 NC_001798.1 + 138165 0.67 0.711552
Target:  5'- cGGGU-CCuggGGGCGCGaCCCgCgGCCGg -3'
miRNA:   3'- -CCCAcGGua-CCUGUGUaGGG-GgCGGC- -5'
5398 5' -60 NC_001798.1 + 153839 0.67 0.701883
Target:  5'- cGGG-GCCuccGGCGCcuucCCCCCGCCc -3'
miRNA:   3'- -CCCaCGGuacCUGUGua--GGGGGCGGc -5'
5398 5' -60 NC_001798.1 + 137671 0.67 0.701883
Target:  5'- cGGG-GCCAcgaaGGAgGCgAUCgCCCCGCUa -3'
miRNA:   3'- -CCCaCGGUa---CCUgUG-UAG-GGGGCGGc -5'
5398 5' -60 NC_001798.1 + 32058 0.67 0.701883
Target:  5'- cGGcGU-CCGcGGGCGCcgcgCCCCCGUCGg -3'
miRNA:   3'- -CC-CAcGGUaCCUGUGua--GGGGGCGGC- -5'
5398 5' -60 NC_001798.1 + 134987 0.67 0.696054
Target:  5'- gGGGgccugGCCcgcgGUGGGCGCcagggucguccugCCCCCGCgGg -3'
miRNA:   3'- -CCCa----CGG----UACCUGUGua-----------GGGGGCGgC- -5'
5398 5' -60 NC_001798.1 + 110902 0.67 0.692158
Target:  5'- cGGUuCgCGUGcGGCcaGCcgCCCCCGCCGg -3'
miRNA:   3'- cCCAcG-GUAC-CUG--UGuaGGGGGCGGC- -5'
5398 5' -60 NC_001798.1 + 36633 0.67 0.692158
Target:  5'- cGGcgGCCGggcggGGGCGCGcuuUCCCCgCGUCGc -3'
miRNA:   3'- cCCa-CGGUa----CCUGUGU---AGGGG-GCGGC- -5'
5398 5' -60 NC_001798.1 + 77563 0.67 0.692158
Target:  5'- aGGGacgGCCggGGAC-CAuUCCCCCaGCgGg -3'
miRNA:   3'- -CCCa--CGGuaCCUGuGU-AGGGGG-CGgC- -5'
5398 5' -60 NC_001798.1 + 120574 0.67 0.691183
Target:  5'- uGGUgGUgGUGGAggggcggUACAgcagaaaccgcUCCCCCGCCGa -3'
miRNA:   3'- cCCA-CGgUACCU-------GUGU-----------AGGGGGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.