miRNA display CGI


Results 21 - 40 of 104 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5399 3' -55.5 NC_001798.1 + 18249 0.67 0.903582
Target:  5'- gGUUUCCgGGGgCCCG-GggGCCAgguaCGCa -3'
miRNA:   3'- -CGAAGG-CCCgGGGUgCuuUGGUa---GUG- -5'
5399 3' -55.5 NC_001798.1 + 71903 0.67 0.903582
Target:  5'- cGCUUCCcGG-CCCugGAGGgCAUcCACc -3'
miRNA:   3'- -CGAAGGcCCgGGGugCUUUgGUA-GUG- -5'
5399 3' -55.5 NC_001798.1 + 109031 0.67 0.903582
Target:  5'- uGCUccCCGGGCCUC-CGGccGGCCccagguAUCGCg -3'
miRNA:   3'- -CGAa-GGCCCGGGGuGCU--UUGG------UAGUG- -5'
5399 3' -55.5 NC_001798.1 + 32001 0.67 0.901686
Target:  5'- cGCcgcgCCGGGCCCCggacucggacucggGCGAccgcggccacgGGCCGcUCGCc -3'
miRNA:   3'- -CGaa--GGCCCGGGG--------------UGCU-----------UUGGU-AGUG- -5'
5399 3' -55.5 NC_001798.1 + 11234 0.67 0.897183
Target:  5'- gGCcgUCGGGCCaCUGCGggGCCGa--- -3'
miRNA:   3'- -CGaaGGCCCGG-GGUGCuuUGGUagug -5'
5399 3' -55.5 NC_001798.1 + 49133 0.67 0.890553
Target:  5'- gGCUUCagcgCGGGUCCCGCGcuguguACCAUg-- -3'
miRNA:   3'- -CGAAG----GCCCGGGGUGCuu----UGGUAgug -5'
5399 3' -55.5 NC_001798.1 + 118969 0.67 0.889877
Target:  5'- gGUUUCCGGucccgcucccaacGCCCCuggcccGCGAGAUaGUCGCg -3'
miRNA:   3'- -CGAAGGCC-------------CGGGG------UGCUUUGgUAGUG- -5'
5399 3' -55.5 NC_001798.1 + 86560 0.67 0.888519
Target:  5'- ---cCUGGGuccuguuuggccacCCCCGCGccGACCAUCGCg -3'
miRNA:   3'- cgaaGGCCC--------------GGGGUGCu-UUGGUAGUG- -5'
5399 3' -55.5 NC_001798.1 + 129688 0.67 0.881594
Target:  5'- gGCgcCgGGGCCCCAguaccggcgcgcauCGGAccccCCAUCGCg -3'
miRNA:   3'- -CGaaGgCCCGGGGU--------------GCUUu---GGUAGUG- -5'
5399 3' -55.5 NC_001798.1 + 51214 0.67 0.876614
Target:  5'- cUUUCCGcGCCCCAgGu--CCGUUACg -3'
miRNA:   3'- cGAAGGCcCGGGGUgCuuuGGUAGUG- -5'
5399 3' -55.5 NC_001798.1 + 86847 0.67 0.876614
Target:  5'- ---cCCGGGCCcggCCGCGAcaagacccggcGGCgGUCGCg -3'
miRNA:   3'- cgaaGGCCCGG---GGUGCU-----------UUGgUAGUG- -5'
5399 3' -55.5 NC_001798.1 + 37487 0.67 0.876614
Target:  5'- aGCUguaCCGGGCCCaaCGCGcgGCCcgCu- -3'
miRNA:   3'- -CGAa--GGCCCGGG--GUGCuuUGGuaGug -5'
5399 3' -55.5 NC_001798.1 + 85779 0.67 0.869314
Target:  5'- cGCaacCCGGGCCCuCAuCGGGACCcUgGCc -3'
miRNA:   3'- -CGaa-GGCCCGGG-GU-GCUUUGGuAgUG- -5'
5399 3' -55.5 NC_001798.1 + 31913 0.67 0.869314
Target:  5'- ---cUCGGGCCCCGCGGccucguCC-UCGCc -3'
miRNA:   3'- cgaaGGCCCGGGGUGCUuu----GGuAGUG- -5'
5399 3' -55.5 NC_001798.1 + 153170 0.67 0.869314
Target:  5'- aGCUcCgGGGCUCCGCcggccGAGGCCGcccUCGCc -3'
miRNA:   3'- -CGAaGgCCCGGGGUG-----CUUUGGU---AGUG- -5'
5399 3' -55.5 NC_001798.1 + 135530 0.68 0.8618
Target:  5'- cGCccgCCGGGCCCU-CGAGGcguCCGUgCGCg -3'
miRNA:   3'- -CGaa-GGCCCGGGGuGCUUU---GGUA-GUG- -5'
5399 3' -55.5 NC_001798.1 + 51299 0.68 0.8618
Target:  5'- gGCUaCCuGGGCCCgAUGGAcCCA-CGCg -3'
miRNA:   3'- -CGAaGG-CCCGGGgUGCUUuGGUaGUG- -5'
5399 3' -55.5 NC_001798.1 + 57724 0.68 0.8618
Target:  5'- ---cCCGGcCCCCGCGAagGACCGgugggCGCg -3'
miRNA:   3'- cgaaGGCCcGGGGUGCU--UUGGUa----GUG- -5'
5399 3' -55.5 NC_001798.1 + 124862 0.68 0.8618
Target:  5'- cUUUCCGuGGCgCCugGGGACUAgaaaCACg -3'
miRNA:   3'- cGAAGGC-CCGgGGugCUUUGGUa---GUG- -5'
5399 3' -55.5 NC_001798.1 + 99186 0.68 0.8618
Target:  5'- ---aCCGGGacgaCCACGAGACCGaCAUg -3'
miRNA:   3'- cgaaGGCCCgg--GGUGCUUUGGUaGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.