Results 21 - 33 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5399 | 5' | -60.2 | NC_001798.1 | + | 2538 | 0.68 | 0.593556 |
Target: 5'- gGGGCGGggGGCGcggCCCccGCGGgAGGGg -3' miRNA: 3'- -CCCGCCa-CUGCa--GGGa-CGUCgUCCUu -5' |
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5399 | 5' | -60.2 | NC_001798.1 | + | 2441 | 0.68 | 0.593556 |
Target: 5'- cGGCGGcUGGCGgcgccagccgCCCUGCGGguCGGGGc -3' miRNA: 3'- cCCGCC-ACUGCa---------GGGACGUC--GUCCUu -5' |
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5399 | 5' | -60.2 | NC_001798.1 | + | 109697 | 0.68 | 0.572668 |
Target: 5'- uGGCGGgcGCG-CCCUcggccgaGCAGCGGGAAc -3' miRNA: 3'- cCCGCCacUGCaGGGA-------CGUCGUCCUU- -5' |
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5399 | 5' | -60.2 | NC_001798.1 | + | 88060 | 0.68 | 0.563767 |
Target: 5'- gGGGCGGgcuCGUCCCcugggGCGGCGGc-- -3' miRNA: 3'- -CCCGCCacuGCAGGGa----CGUCGUCcuu -5' |
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5399 | 5' | -60.2 | NC_001798.1 | + | 2576 | 0.68 | 0.563767 |
Target: 5'- gGGGCGGggGGCGUCCgC-GCGGCucuucuucGGGGGg -3' miRNA: 3'- -CCCGCCa-CUGCAGG-GaCGUCG--------UCCUU- -5' |
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5399 | 5' | -60.2 | NC_001798.1 | + | 7195 | 0.69 | 0.544126 |
Target: 5'- gGGGCGGcGACcaugaUCCgGCGGCGGGGAa -3' miRNA: 3'- -CCCGCCaCUGca---GGGaCGUCGUCCUU- -5' |
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5399 | 5' | -60.2 | NC_001798.1 | + | 154128 | 0.69 | 0.534389 |
Target: 5'- cGGCGGgGAC--CCCgGCGGCGGGAc -3' miRNA: 3'- cCCGCCaCUGcaGGGaCGUCGUCCUu -5' |
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5399 | 5' | -60.2 | NC_001798.1 | + | 53106 | 0.69 | 0.534389 |
Target: 5'- cGGGCGcGcGGCGcgagcUCCCUGCGGCuGGc- -3' miRNA: 3'- -CCCGC-CaCUGC-----AGGGACGUCGuCCuu -5' |
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5399 | 5' | -60.2 | NC_001798.1 | + | 70451 | 0.69 | 0.511283 |
Target: 5'- uGGCGGUGGCGcUCCCcgagacccccgagGCGGCcuuccGGGAGa -3' miRNA: 3'- cCCGCCACUGC-AGGGa------------CGUCG-----UCCUU- -5' |
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5399 | 5' | -60.2 | NC_001798.1 | + | 56400 | 0.7 | 0.47744 |
Target: 5'- --uCGGUGGgGUCCC-GCGGCGGGGg -3' miRNA: 3'- cccGCCACUgCAGGGaCGUCGUCCUu -5' |
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5399 | 5' | -60.2 | NC_001798.1 | + | 150934 | 0.73 | 0.313501 |
Target: 5'- cGGGCGG-GACGuagUCCaCUGCAGaGGGAGa -3' miRNA: 3'- -CCCGCCaCUGC---AGG-GACGUCgUCCUU- -5' |
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5399 | 5' | -60.2 | NC_001798.1 | + | 79299 | 0.75 | 0.237506 |
Target: 5'- uGGGCGGUGGaggaGUUCCgggGCGcGCGGGAAc -3' miRNA: 3'- -CCCGCCACUg---CAGGGa--CGU-CGUCCUU- -5' |
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5399 | 5' | -60.2 | NC_001798.1 | + | 11635 | 0.76 | 0.210688 |
Target: 5'- cGGGCGcG-GGCGUCCCUGUguccccgggGGCGGGGGu -3' miRNA: 3'- -CCCGC-CaCUGCAGGGACG---------UCGUCCUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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