miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5401 5' -61.1 NC_001798.1 + 78846 0.66 0.706253
Target:  5'- -cUGGCGCGgcaCgCCGGCCGCcuggGGGCg- -3'
miRNA:   3'- acAUCGUGCa--GgGGCCGGCG----CUCGac -5'
5401 5' -61.1 NC_001798.1 + 76705 0.66 0.706253
Target:  5'- --aGGCGCGcUCCCGGCuuCGgGAGCg- -3'
miRNA:   3'- acaUCGUGCaGGGGCCG--GCgCUCGac -5'
5401 5' -61.1 NC_001798.1 + 16511 0.66 0.706253
Target:  5'- gGUAGUACGUCacaCgGGCCGCauacGUUGc -3'
miRNA:   3'- aCAUCGUGCAGg--GgCCGGCGcu--CGAC- -5'
5401 5' -61.1 NC_001798.1 + 14462 0.66 0.706253
Target:  5'- --aGGCACGccCCCCGGCgGCG-GUc- -3'
miRNA:   3'- acaUCGUGCa-GGGGCCGgCGCuCGac -5'
5401 5' -61.1 NC_001798.1 + 2756 0.66 0.706253
Target:  5'- --gAGCAgGUCCgCGGCgGCG-GCg- -3'
miRNA:   3'- acaUCGUgCAGGgGCCGgCGCuCGac -5'
5401 5' -61.1 NC_001798.1 + 3213 0.66 0.696532
Target:  5'- aGgcgGGCGCGgcgcucaggcgCCCCagGGCgGCGAGCa- -3'
miRNA:   3'- aCa--UCGUGCa----------GGGG--CCGgCGCUCGac -5'
5401 5' -61.1 NC_001798.1 + 119374 0.66 0.695557
Target:  5'- aGgcGCugGUCgCCUGGCuggcgcaCGCGGGCc- -3'
miRNA:   3'- aCauCGugCAG-GGGCCG-------GCGCUCGac -5'
5401 5' -61.1 NC_001798.1 + 105410 0.66 0.686761
Target:  5'- --gGGC-CG-CCgCGGCCGCGGugcGCUGg -3'
miRNA:   3'- acaUCGuGCaGGgGCCGGCGCU---CGAC- -5'
5401 5' -61.1 NC_001798.1 + 147232 0.66 0.684801
Target:  5'- --gAGCGCGggggccccggggCCCCgGGCCGCGccGGCg- -3'
miRNA:   3'- acaUCGUGCa-----------GGGG-CCGGCGC--UCGac -5'
5401 5' -61.1 NC_001798.1 + 2542 0.66 0.676947
Target:  5'- cGgggGGCGCGgCCCCcgcgggaggggcGGCCGCgGGGCg- -3'
miRNA:   3'- aCa--UCGUGCaGGGG------------CCGGCG-CUCGac -5'
5401 5' -61.1 NC_001798.1 + 51170 0.66 0.667099
Target:  5'- ---cGCGCGUCCgaGGCC-CGGGCg- -3'
miRNA:   3'- acauCGUGCAGGggCCGGcGCUCGac -5'
5401 5' -61.1 NC_001798.1 + 141441 0.66 0.667099
Target:  5'- cGUGGacaAUGUCauuuuCCggGGCUGCGAGCUGc -3'
miRNA:   3'- aCAUCg--UGCAGg----GG--CCGGCGCUCGAC- -5'
5401 5' -61.1 NC_001798.1 + 98585 0.66 0.657224
Target:  5'- gGUGGCGuCGgcggCCCCGGCgGCcccGGCg- -3'
miRNA:   3'- aCAUCGU-GCa---GGGGCCGgCGc--UCGac -5'
5401 5' -61.1 NC_001798.1 + 35583 0.66 0.657224
Target:  5'- cGgcGCugcuCGgCUgCGGCCGCGGGCUc -3'
miRNA:   3'- aCauCGu---GCaGGgGCCGGCGCUCGAc -5'
5401 5' -61.1 NC_001798.1 + 111217 0.66 0.657224
Target:  5'- --cGGcCACGgUCCCGGCCGCcAGCg- -3'
miRNA:   3'- acaUC-GUGCaGGGGCCGGCGcUCGac -5'
5401 5' -61.1 NC_001798.1 + 127338 0.66 0.657224
Target:  5'- cGUGGCcccgagccuggGCGUCCCCGugacCCGCGucccgGGCUa -3'
miRNA:   3'- aCAUCG-----------UGCAGGGGCc---GGCGC-----UCGAc -5'
5401 5' -61.1 NC_001798.1 + 134187 0.66 0.657224
Target:  5'- ---cGCgACGgCCCCGGCCGCcuccccGCUGg -3'
miRNA:   3'- acauCG-UGCaGGGGCCGGCGcu----CGAC- -5'
5401 5' -61.1 NC_001798.1 + 25912 0.66 0.657224
Target:  5'- --cAGCACGccuaCCUGGCCuGCGAGgUGc -3'
miRNA:   3'- acaUCGUGCag--GGGCCGG-CGCUCgAC- -5'
5401 5' -61.1 NC_001798.1 + 65672 0.67 0.64733
Target:  5'- gGUAcacGCACG-CCCCGGUggggCGCGuGCUc -3'
miRNA:   3'- aCAU---CGUGCaGGGGCCG----GCGCuCGAc -5'
5401 5' -61.1 NC_001798.1 + 53904 0.67 0.64733
Target:  5'- cGUuuGCGCGcCaCCUGGaCCGCGGGCc- -3'
miRNA:   3'- aCAu-CGUGCaG-GGGCC-GGCGCUCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.