miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5402 3' -54.4 NC_001798.1 + 137470 0.66 0.966081
Target:  5'- -aUCG-GcgGGgGUUGGGGaGGGggGCc -3'
miRNA:   3'- ccAGCuCuaCCgCAGCCUC-CUCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 56195 0.66 0.966081
Target:  5'- gGGUgGGGuGUGGUGgguaCGGGGGAcgGAAGg -3'
miRNA:   3'- -CCAgCUC-UACCGCa---GCCUCCU--CUUCg -5'
5402 3' -54.4 NC_001798.1 + 91287 0.66 0.962796
Target:  5'- cGUCuGGGUGGCucccCGGGGGuugugGGggGCa -3'
miRNA:   3'- cCAGcUCUACCGca--GCCUCC-----UCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 64133 0.66 0.962796
Target:  5'- gGGUaucuaGGGGgucGGUGcucgCGGGGGAGAcGGCg -3'
miRNA:   3'- -CCAg----CUCUa--CCGCa---GCCUCCUCU-UCG- -5'
5402 3' -54.4 NC_001798.1 + 7799 0.66 0.962796
Target:  5'- uGG-CGGGAgccaGG-GUCGGAcaGGAGgcGCa -3'
miRNA:   3'- -CCaGCUCUa---CCgCAGCCU--CCUCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 34606 0.66 0.959296
Target:  5'- uGGgacgCGGGcaaagGGCGgcggcggCGGGGGGGggGg -3'
miRNA:   3'- -CCa---GCUCua---CCGCa------GCCUCCUCuuCg -5'
5402 3' -54.4 NC_001798.1 + 27402 0.66 0.959296
Target:  5'- uGGUgCGAc-UGGCGucuUCGGGGGggcgGGGAGCu -3'
miRNA:   3'- -CCA-GCUcuACCGC---AGCCUCC----UCUUCG- -5'
5402 3' -54.4 NC_001798.1 + 150570 0.66 0.955576
Target:  5'- gGGgcccgCGGGgcGGCGcggagacggCGGGGGAGAGucGCu -3'
miRNA:   3'- -CCa----GCUCuaCCGCa--------GCCUCCUCUU--CG- -5'
5402 3' -54.4 NC_001798.1 + 14981 0.66 0.955576
Target:  5'- --gCGGGAgcuugGGCGg-GGGGGcGAGGCg -3'
miRNA:   3'- ccaGCUCUa----CCGCagCCUCCuCUUCG- -5'
5402 3' -54.4 NC_001798.1 + 44843 0.66 0.955576
Target:  5'- cGGagGGGGUGGgGU-GGGGGA-AAGCc -3'
miRNA:   3'- -CCagCUCUACCgCAgCCUCCUcUUCG- -5'
5402 3' -54.4 NC_001798.1 + 46518 0.66 0.955576
Target:  5'- -cUCGGcucGGUGaGgGUCGGGGGGGuGGCc -3'
miRNA:   3'- ccAGCU---CUAC-CgCAGCCUCCUCuUCG- -5'
5402 3' -54.4 NC_001798.1 + 103077 0.66 0.955576
Target:  5'- gGGUCcAGGUGGCGaaaCGGAGcGAu-GGCc -3'
miRNA:   3'- -CCAGcUCUACCGCa--GCCUC-CUcuUCG- -5'
5402 3' -54.4 NC_001798.1 + 113980 0.66 0.955576
Target:  5'- cGG-CGGuGA-GGCGUUGuGcGGGAGggGCu -3'
miRNA:   3'- -CCaGCU-CUaCCGCAGC-C-UCCUCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 15489 0.66 0.955192
Target:  5'- gGGUCGuGGgggcUGGUGUggUGGGGGgcguuuucgcugcGGAGGCg -3'
miRNA:   3'- -CCAGCuCU----ACCGCA--GCCUCC-------------UCUUCG- -5'
5402 3' -54.4 NC_001798.1 + 149399 0.66 0.951632
Target:  5'- --gCGGGG-GGCGUCGGGuagucGGGggGCc -3'
miRNA:   3'- ccaGCUCUaCCGCAGCCUc----CUCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 2516 0.66 0.951632
Target:  5'- cGGccgCGGcGgcGGCGUCGGcGGGgcgGGggGCg -3'
miRNA:   3'- -CCa--GCU-CuaCCGCAGCC-UCC---UCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 49842 0.66 0.951632
Target:  5'- uGGUgCGaAGugcGGCGgCGGAGGAacccGggGCg -3'
miRNA:   3'- -CCA-GC-UCua-CCGCaGCCUCCU----CuuCG- -5'
5402 3' -54.4 NC_001798.1 + 94274 0.67 0.947459
Target:  5'- --aCGGGGUguucgccgGGCaGUCGGucGAGggGCg -3'
miRNA:   3'- ccaGCUCUA--------CCG-CAGCCucCUCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 17964 0.67 0.947459
Target:  5'- -uUCGcAGGUccGGaCGUCGGGGGGGGcuGCg -3'
miRNA:   3'- ccAGC-UCUA--CC-GCAGCCUCCUCUu-CG- -5'
5402 3' -54.4 NC_001798.1 + 8875 0.67 0.947459
Target:  5'- cGGaCGcGGAagGGCGcuggCGGAGGgcGGAGGCg -3'
miRNA:   3'- -CCaGC-UCUa-CCGCa---GCCUCC--UCUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.