miRNA display CGI


Results 21 - 40 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5402 3' -54.4 NC_001798.1 + 135860 0.67 0.928438
Target:  5'- -uUCGGGA-GGCGUCuGGAcgcGGAGuacugGAGCg -3'
miRNA:   3'- ccAGCUCUaCCGCAG-CCU---CCUC-----UUCG- -5'
5402 3' -54.4 NC_001798.1 + 107400 0.67 0.928438
Target:  5'- ---gGAGGUGGCG--GGAGGAcuGggGCc -3'
miRNA:   3'- ccagCUCUACCGCagCCUCCU--CuuCG- -5'
5402 3' -54.4 NC_001798.1 + 39380 0.67 0.928438
Target:  5'- gGGUCGA--UGGUGUCGGcAGaGGgcGCc -3'
miRNA:   3'- -CCAGCUcuACCGCAGCC-UCcUCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 23873 0.67 0.933547
Target:  5'- cGGccUCuGGggGGCGcccgaggCGGAGGAGgcGCg -3'
miRNA:   3'- -CC--AGcUCuaCCGCa------GCCUCCUCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 4262 0.67 0.937464
Target:  5'- --aCGAGGaGGCGgaugcagacgaGGAGGAgGAGGCg -3'
miRNA:   3'- ccaGCUCUaCCGCag---------CCUCCU-CUUCG- -5'
5402 3' -54.4 NC_001798.1 + 22888 0.67 0.942603
Target:  5'- gGGUUcGGGUGGCacgguggGcCGGAGGAGAAc- -3'
miRNA:   3'- -CCAGcUCUACCG-------CaGCCUCCUCUUcg -5'
5402 3' -54.4 NC_001798.1 + 41643 0.67 0.947459
Target:  5'- cGGUCGuGA-GGUGcUGGAGGG--AGCg -3'
miRNA:   3'- -CCAGCuCUaCCGCaGCCUCCUcuUCG- -5'
5402 3' -54.4 NC_001798.1 + 94274 0.67 0.947459
Target:  5'- --aCGGGGUguucgccgGGCaGUCGGucGAGggGCg -3'
miRNA:   3'- ccaGCUCUA--------CCG-CAGCCucCUCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 17964 0.67 0.947459
Target:  5'- -uUCGcAGGUccGGaCGUCGGGGGGGGcuGCg -3'
miRNA:   3'- ccAGC-UCUA--CC-GCAGCCUCCUCUu-CG- -5'
5402 3' -54.4 NC_001798.1 + 8875 0.67 0.947459
Target:  5'- cGGaCGcGGAagGGCGcuggCGGAGGgcGGAGGCg -3'
miRNA:   3'- -CCaGC-UCUa-CCGCa---GCCUCC--UCUUCG- -5'
5402 3' -54.4 NC_001798.1 + 40484 0.67 0.944845
Target:  5'- aGUCG-GAcgagccugccugugcUGG-GcCGGGGGAGggGCa -3'
miRNA:   3'- cCAGCuCU---------------ACCgCaGCCUCCUCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 36831 0.67 0.942603
Target:  5'- uGGUCGGcGUGGgGacCGGcugugugguggguGGGGGAGGCa -3'
miRNA:   3'- -CCAGCUcUACCgCa-GCC-------------UCCUCUUCG- -5'
5402 3' -54.4 NC_001798.1 + 15725 0.68 0.911692
Target:  5'- gGGUCGAcuGAgggugccaUGGCGgUGGccgacacaGGGAGggGCg -3'
miRNA:   3'- -CCAGCU--CU--------ACCGCaGCC--------UCCUCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 43682 0.68 0.91751
Target:  5'- gGGUCGuGGGUGGUcaCGGcccGGAGAuGCg -3'
miRNA:   3'- -CCAGC-UCUACCGcaGCCu--CCUCUuCG- -5'
5402 3' -54.4 NC_001798.1 + 12554 0.68 0.921443
Target:  5'- uGGUgCGAGGgggGcGCGUCgucaucccggauguGGGGGAGAcguaGGCg -3'
miRNA:   3'- -CCA-GCUCUa--C-CGCAG--------------CCUCCUCU----UCG- -5'
5402 3' -54.4 NC_001798.1 + 27130 0.68 0.921995
Target:  5'- aGGagCGGGAgggaaggcacggGGCG-CGGgaGGGAGggGCu -3'
miRNA:   3'- -CCa-GCUCUa-----------CCGCaGCC--UCCUCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 68135 0.68 0.922545
Target:  5'- cGG-CGAGGgcggaguUGGUGUguaggGGGGGGGAAGUg -3'
miRNA:   3'- -CCaGCUCU-------ACCGCAg----CCUCCUCUUCG- -5'
5402 3' -54.4 NC_001798.1 + 34741 0.68 0.923093
Target:  5'- cGGgccCGGGAgcggGGCGgccCGGgaGGGAGAAGa -3'
miRNA:   3'- -CCa--GCUCUa---CCGCa--GCC--UCCUCUUCg -5'
5402 3' -54.4 NC_001798.1 + 98578 0.68 0.923093
Target:  5'- uGGcCGcGGUGGCGUCGGcGGccccGGCg -3'
miRNA:   3'- -CCaGCuCUACCGCAGCCuCCucu-UCG- -5'
5402 3' -54.4 NC_001798.1 + 45983 0.68 0.911692
Target:  5'- -cUCGuGGAUGuuGUCGGGGGGGAuccaggggagGGCg -3'
miRNA:   3'- ccAGC-UCUACcgCAGCCUCCUCU----------UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.