miRNA display CGI


Results 41 - 60 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5402 3' -54.4 NC_001798.1 + 43682 0.68 0.91751
Target:  5'- gGGUCGuGGGUGGUcaCGGcccGGAGAuGCg -3'
miRNA:   3'- -CCAGC-UCUACCGcaGCCu--CCUCUuCG- -5'
5402 3' -54.4 NC_001798.1 + 102641 0.68 0.923093
Target:  5'- cGUCGccg-GGCGgCGGAGGGGccgGGGCg -3'
miRNA:   3'- cCAGCucuaCCGCaGCCUCCUC---UUCG- -5'
5402 3' -54.4 NC_001798.1 + 98578 0.68 0.923093
Target:  5'- uGGcCGcGGUGGCGUCGGcGGccccGGCg -3'
miRNA:   3'- -CCaGCuCUACCGCAGCCuCCucu-UCG- -5'
5402 3' -54.4 NC_001798.1 + 34741 0.68 0.923093
Target:  5'- cGGgccCGGGAgcggGGCGgccCGGgaGGGAGAAGa -3'
miRNA:   3'- -CCa--GCUCUa---CCGCa--GCC--UCCUCUUCg -5'
5402 3' -54.4 NC_001798.1 + 68135 0.68 0.922545
Target:  5'- cGG-CGAGGgcggaguUGGUGUguaggGGGGGGGAAGUg -3'
miRNA:   3'- -CCaGCUCU-------ACCGCAg----CCUCCUCUUCG- -5'
5402 3' -54.4 NC_001798.1 + 27130 0.68 0.921995
Target:  5'- aGGagCGGGAgggaaggcacggGGCG-CGGgaGGGAGggGCu -3'
miRNA:   3'- -CCa-GCUCUa-----------CCGCaGCC--UCCUCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 12554 0.68 0.921443
Target:  5'- uGGUgCGAGGgggGcGCGUCgucaucccggauguGGGGGAGAcguaGGCg -3'
miRNA:   3'- -CCA-GCUCUa--C-CGCAG--------------CCUCCUCU----UCG- -5'
5402 3' -54.4 NC_001798.1 + 16063 0.69 0.864555
Target:  5'- aGGUCGcugggggcGGcgGGCGUCuguGGGGGcAGAcAGCg -3'
miRNA:   3'- -CCAGC--------UCuaCCGCAG---CCUCC-UCU-UCG- -5'
5402 3' -54.4 NC_001798.1 + 83632 0.69 0.864555
Target:  5'- gGGcCG-GA-GGCGggagCGGAGGGGAuguGCg -3'
miRNA:   3'- -CCaGCuCUaCCGCa---GCCUCCUCUu--CG- -5'
5402 3' -54.4 NC_001798.1 + 148410 0.69 0.864555
Target:  5'- cGGgCGGGGUgGGCGcCGGGGcGGggGUg -3'
miRNA:   3'- -CCaGCUCUA-CCGCaGCCUCcUCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 40124 0.69 0.87122
Target:  5'- aGGUCGccggggcugGGAUGGCGgguguccUCcGAGGGGgcGCg -3'
miRNA:   3'- -CCAGC---------UCUACCGC-------AGcCUCCUCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 117089 0.69 0.87195
Target:  5'- --gCGAGAgcGCGgCGGGGGAGAAcGCg -3'
miRNA:   3'- ccaGCUCUacCGCaGCCUCCUCUU-CG- -5'
5402 3' -54.4 NC_001798.1 + 12350 0.69 0.87195
Target:  5'- gGGUCGAGGUGGCuGUgGGcGcGGuGGCu -3'
miRNA:   3'- -CCAGCUCUACCG-CAgCCuCcUCuUCG- -5'
5402 3' -54.4 NC_001798.1 + 58980 0.69 0.87195
Target:  5'- cGUCGGcGGccgGGCGaacgCGGGGGGGgcGCg -3'
miRNA:   3'- cCAGCU-CUa--CCGCa---GCCUCCUCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 101002 0.69 0.87195
Target:  5'- aGGggGAGGaaGGCG-CGGAGG-GggGCg -3'
miRNA:   3'- -CCagCUCUa-CCGCaGCCUCCuCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 10384 0.69 0.879133
Target:  5'- cGUCGGGGgucGGgGUCGGcacAGGGGcGGGCu -3'
miRNA:   3'- cCAGCUCUa--CCgCAGCC---UCCUC-UUCG- -5'
5402 3' -54.4 NC_001798.1 + 42603 0.69 0.879133
Target:  5'- aGGUCGAGGUacgcGGCcucGUCGuccGGGAGggGg -3'
miRNA:   3'- -CCAGCUCUA----CCG---CAGCc--UCCUCuuCg -5'
5402 3' -54.4 NC_001798.1 + 27554 0.69 0.886097
Target:  5'- gGGggaGGGgcGGCGcccgCGGGGGAGcGGCc -3'
miRNA:   3'- -CCag-CUCuaCCGCa---GCCUCCUCuUCG- -5'
5402 3' -54.4 NC_001798.1 + 112465 0.69 0.886097
Target:  5'- gGGgaauagUGGGGUGGUGggaGGAGGgugguGGGAGCa -3'
miRNA:   3'- -CCa-----GCUCUACCGCag-CCUCC-----UCUUCG- -5'
5402 3' -54.4 NC_001798.1 + 27310 0.69 0.864555
Target:  5'- cGG-CGGGAUGGagggGagGGAGGGGGuGGCg -3'
miRNA:   3'- -CCaGCUCUACCg---CagCCUCCUCU-UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.