miRNA display CGI


Results 61 - 80 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5402 3' -54.4 NC_001798.1 + 42603 0.69 0.879133
Target:  5'- aGGUCGAGGUacgcGGCcucGUCGuccGGGAGggGg -3'
miRNA:   3'- -CCAGCUCUA----CCG---CAGCc--UCCUCuuCg -5'
5402 3' -54.4 NC_001798.1 + 10384 0.69 0.879133
Target:  5'- cGUCGGGGgucGGgGUCGGcacAGGGGcGGGCu -3'
miRNA:   3'- cCAGCUCUa--CCgCAGCC---UCCUC-UUCG- -5'
5402 3' -54.4 NC_001798.1 + 101002 0.69 0.87195
Target:  5'- aGGggGAGGaaGGCG-CGGAGG-GggGCg -3'
miRNA:   3'- -CCagCUCUa-CCGCaGCCUCCuCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 58980 0.69 0.87195
Target:  5'- cGUCGGcGGccgGGCGaacgCGGGGGGGgcGCg -3'
miRNA:   3'- cCAGCU-CUa--CCGCa---GCCUCCUCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 146096 0.7 0.807343
Target:  5'- aGG-CGGGcgGGCGaaGGAaGGGGggGUg -3'
miRNA:   3'- -CCaGCUCuaCCGCagCCU-CCUCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 22754 0.7 0.81605
Target:  5'- aGGUCGcGAUGGCGgacgaGGAcGGGGGAcGUc -3'
miRNA:   3'- -CCAGCuCUACCGCag---CCU-CCUCUU-CG- -5'
5402 3' -54.4 NC_001798.1 + 26900 0.7 0.824593
Target:  5'- gGGUCGGGcgGGCGggGGucGGGcGGGCg -3'
miRNA:   3'- -CCAGCUCuaCCGCagCCucCUC-UUCG- -5'
5402 3' -54.4 NC_001798.1 + 22681 0.7 0.832961
Target:  5'- cGGUCG-GA-GGCGaugUCGGcGGAGcAGCg -3'
miRNA:   3'- -CCAGCuCUaCCGC---AGCCuCCUCuUCG- -5'
5402 3' -54.4 NC_001798.1 + 11326 0.7 0.841149
Target:  5'- uGGUCGuGGAcgacgacgaacGGCGUCGGgguuuGGGGGggGUg -3'
miRNA:   3'- -CCAGC-UCUa----------CCGCAGCC-----UCCUCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 51459 0.7 0.841149
Target:  5'- cGGUCGAGAUucucgcgggccGcGUGUCGGGcccGGAGcuGCa -3'
miRNA:   3'- -CCAGCUCUA-----------C-CGCAGCCU---CCUCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 32949 0.7 0.849148
Target:  5'- aGUgGGGGUGGgaGUgGGGGGGGggGa -3'
miRNA:   3'- cCAgCUCUACCg-CAgCCUCCUCuuCg -5'
5402 3' -54.4 NC_001798.1 + 48571 0.71 0.761614
Target:  5'- aGGggCGGGAggGGCGggaGGggcGGGAGggGCg -3'
miRNA:   3'- -CCa-GCUCUa-CCGCag-CC---UCCUCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 48607 0.71 0.761614
Target:  5'- aGGggCGGGAggGGCGggaGGggcGGGAGggGCg -3'
miRNA:   3'- -CCa-GCUCUa-CCGCag-CC---UCCUCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 51087 0.71 0.771023
Target:  5'- aGGUCGAGGc--CG-CGGGGGAGAuGGCg -3'
miRNA:   3'- -CCAGCUCUaccGCaGCCUCCUCU-UCG- -5'
5402 3' -54.4 NC_001798.1 + 64346 0.71 0.771023
Target:  5'- uGGaCGAGAaGGCGgaccagggUGGAGGcgGGGAGCg -3'
miRNA:   3'- -CCaGCUCUaCCGCa-------GCCUCC--UCUUCG- -5'
5402 3' -54.4 NC_001798.1 + 90804 0.71 0.780309
Target:  5'- cGG-CGAcgcGAUGGCuUCGGGGGucagacccAGAAGCg -3'
miRNA:   3'- -CCaGCU---CUACCGcAGCCUCC--------UCUUCG- -5'
5402 3' -54.4 NC_001798.1 + 101853 0.71 0.789464
Target:  5'- gGGUCccGgcGGCGgCGGAGGGGGgugGGCg -3'
miRNA:   3'- -CCAGcuCuaCCGCaGCCUCCUCU---UCG- -5'
5402 3' -54.4 NC_001798.1 + 9838 0.71 0.798478
Target:  5'- aGGUaGAGGccGGCGUgCuGGGGGGAGGCg -3'
miRNA:   3'- -CCAgCUCUa-CCGCA-GcCUCCUCUUCG- -5'
5402 3' -54.4 NC_001798.1 + 39447 0.71 0.798478
Target:  5'- gGGUCaGGGAcaGCGccaucagCGGAGGGGggGCc -3'
miRNA:   3'- -CCAG-CUCUacCGCa------GCCUCCUCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 48535 0.71 0.761614
Target:  5'- aGGggCGGGAggGGCGggaGGggcGGGAGggGCg -3'
miRNA:   3'- -CCa-GCUCUa-CCGCag-CC---UCCUCuuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.