miRNA display CGI


Results 81 - 100 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5402 3' -54.4 NC_001798.1 + 39447 0.71 0.798478
Target:  5'- gGGUCaGGGAcaGCGccaucagCGGAGGGGggGCc -3'
miRNA:   3'- -CCAG-CUCUacCGCa------GCCUCCUCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 15324 0.71 0.798478
Target:  5'- cGGcCGAGGgccccGGCGcgguagCGGGGGGcGAGGCg -3'
miRNA:   3'- -CCaGCUCUa----CCGCa-----GCCUCCU-CUUCG- -5'
5402 3' -54.4 NC_001798.1 + 149900 0.72 0.70309
Target:  5'- aGGagGAGGaGGCGgaGGAGGAgGAGGCg -3'
miRNA:   3'- -CCagCUCUaCCGCagCCUCCU-CUUCG- -5'
5402 3' -54.4 NC_001798.1 + 149870 0.72 0.70309
Target:  5'- aGGagGAGGaGGCGgaGGAGGAgGAGGCg -3'
miRNA:   3'- -CCagCUCUaCCGCagCCUCCU-CUUCG- -5'
5402 3' -54.4 NC_001798.1 + 149840 0.72 0.70309
Target:  5'- aGGagGAGGaGGCGgaGGAGGAgGAGGCg -3'
miRNA:   3'- -CCagCUCUaCCGCagCCUCCU-CUUCG- -5'
5402 3' -54.4 NC_001798.1 + 4393 0.72 0.70309
Target:  5'- uGGUgGuGGUGGUGUCGGcggggcgccGGGGGucGCg -3'
miRNA:   3'- -CCAgCuCUACCGCAGCC---------UCCUCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 5273 0.72 0.722932
Target:  5'- ---gGAGGaGGaCG-CGGAGGAGGAGCg -3'
miRNA:   3'- ccagCUCUaCC-GCaGCCUCCUCUUCG- -5'
5402 3' -54.4 NC_001798.1 + 27019 0.72 0.722932
Target:  5'- gGGUCGGGcgGGCGggggUCGGGcGGGcGGCa -3'
miRNA:   3'- -CCAGCUCuaCCGC----AGCCUcCUCuUCG- -5'
5402 3' -54.4 NC_001798.1 + 35799 0.72 0.742464
Target:  5'- -uUCGucg-GGCGgCGGGGGGGggGCg -3'
miRNA:   3'- ccAGCucuaCCGCaGCCUCCUCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 27179 0.72 0.742464
Target:  5'- -cUCGGGGccgcgGGCG-CGGGGGgAGggGCg -3'
miRNA:   3'- ccAGCUCUa----CCGCaGCCUCC-UCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 122214 0.72 0.742464
Target:  5'- uGGUCGAG-UGGCuGgaccgCGGGuGGGAAGCu -3'
miRNA:   3'- -CCAGCUCuACCG-Ca----GCCUcCUCUUCG- -5'
5402 3' -54.4 NC_001798.1 + 59841 0.72 0.750174
Target:  5'- cGGUCGcccgcguccGGC-UCGGAGGAGGAGUc -3'
miRNA:   3'- -CCAGCucua-----CCGcAGCCUCCUCUUCG- -5'
5402 3' -54.4 NC_001798.1 + 27256 0.72 0.752092
Target:  5'- cGGccgCGGGAccgcagccccgUGGCGcgCGGGGGGGAGGg -3'
miRNA:   3'- -CCa--GCUCU-----------ACCGCa-GCCUCCUCUUCg -5'
5402 3' -54.4 NC_001798.1 + 10286 0.73 0.650567
Target:  5'- cGUCGGGggGGCGacggggggacgaCGGGGGGGggGUu -3'
miRNA:   3'- cCAGCUCuaCCGCa-----------GCCUCCUCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 57517 0.73 0.693075
Target:  5'- gGGUUGGGggGGCGUgGGuguGGuucgGGggGCg -3'
miRNA:   3'- -CCAGCUCuaCCGCAgCCu--CC----UCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 9720 0.74 0.642422
Target:  5'- gGGcUCGGGcUGGCGcUGGGGGAGguGCu -3'
miRNA:   3'- -CC-AGCUCuACCGCaGCCUCCUCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 111643 0.74 0.611865
Target:  5'- cGUCGGG--GGCGcUCGGcGGGGggGCg -3'
miRNA:   3'- cCAGCUCuaCCGC-AGCCuCCUCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 38342 0.75 0.591557
Target:  5'- aGGuUCGAGAggGGCGUCGuugucauguugcGAGGGGggGg -3'
miRNA:   3'- -CC-AGCUCUa-CCGCAGC------------CUCCUCuuCg -5'
5402 3' -54.4 NC_001798.1 + 26974 0.75 0.577407
Target:  5'- gGGUCGGGcgGGCGggggucgggcgggCGGGGGucGGGCg -3'
miRNA:   3'- -CCAGCUCuaCCGCa------------GCCUCCucUUCG- -5'
5402 3' -54.4 NC_001798.1 + 26855 0.75 0.577407
Target:  5'- gGGUCGGGcgGGCGggggucgggcgggCGGGGGucGGGCg -3'
miRNA:   3'- -CCAGCUCuaCCGCa------------GCCUCCucUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.