miRNA display CGI


Results 41 - 60 of 113 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5402 3' -54.4 NC_001798.1 + 2559 0.71 0.761614
Target:  5'- --gCGGGAggGGCGgccgCGGGGcGGGggGCg -3'
miRNA:   3'- ccaGCUCUa-CCGCa---GCCUC-CUCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 48571 0.71 0.761614
Target:  5'- aGGggCGGGAggGGCGggaGGggcGGGAGggGCg -3'
miRNA:   3'- -CCa-GCUCUa-CCGCag-CC---UCCUCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 26900 0.7 0.824593
Target:  5'- gGGUCGGGcgGGCGggGGucGGGcGGGCg -3'
miRNA:   3'- -CCAGCUCuaCCGCagCCucCUC-UUCG- -5'
5402 3' -54.4 NC_001798.1 + 32949 0.7 0.849148
Target:  5'- aGUgGGGGUGGgaGUgGGGGGGGggGa -3'
miRNA:   3'- cCAgCUCUACCg-CAgCCUCCUCuuCg -5'
5402 3' -54.4 NC_001798.1 + 22681 0.7 0.832961
Target:  5'- cGGUCG-GA-GGCGaugUCGGcGGAGcAGCg -3'
miRNA:   3'- -CCAGCuCUaCCGC---AGCCuCCUCuUCG- -5'
5402 3' -54.4 NC_001798.1 + 22754 0.7 0.81605
Target:  5'- aGGUCGcGAUGGCGgacgaGGAcGGGGGAcGUc -3'
miRNA:   3'- -CCAGCuCUACCGCag---CCU-CCUCUU-CG- -5'
5402 3' -54.4 NC_001798.1 + 146096 0.7 0.807343
Target:  5'- aGG-CGGGcgGGCGaaGGAaGGGGggGUg -3'
miRNA:   3'- -CCaGCUCuaCCGCagCCU-CCUCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 11326 0.7 0.841149
Target:  5'- uGGUCGuGGAcgacgacgaacGGCGUCGGgguuuGGGGGggGUg -3'
miRNA:   3'- -CCAGC-UCUa----------CCGCAGCC-----UCCUCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 51459 0.7 0.841149
Target:  5'- cGGUCGAGAUucucgcgggccGcGUGUCGGGcccGGAGcuGCa -3'
miRNA:   3'- -CCAGCUCUA-----------C-CGCAGCCU---CCUCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 16063 0.69 0.864555
Target:  5'- aGGUCGcugggggcGGcgGGCGUCuguGGGGGcAGAcAGCg -3'
miRNA:   3'- -CCAGC--------UCuaCCGCAG---CCUCC-UCU-UCG- -5'
5402 3' -54.4 NC_001798.1 + 83632 0.69 0.864555
Target:  5'- gGGcCG-GA-GGCGggagCGGAGGGGAuguGCg -3'
miRNA:   3'- -CCaGCuCUaCCGCa---GCCUCCUCUu--CG- -5'
5402 3' -54.4 NC_001798.1 + 148410 0.69 0.864555
Target:  5'- cGGgCGGGGUgGGCGcCGGGGcGGggGUg -3'
miRNA:   3'- -CCaGCUCUA-CCGCaGCCUCcUCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 40124 0.69 0.87122
Target:  5'- aGGUCGccggggcugGGAUGGCGgguguccUCcGAGGGGgcGCg -3'
miRNA:   3'- -CCAGC---------UCUACCGC-------AGcCUCCUCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 117089 0.69 0.87195
Target:  5'- --gCGAGAgcGCGgCGGGGGAGAAcGCg -3'
miRNA:   3'- ccaGCUCUacCGCaGCCUCCUCUU-CG- -5'
5402 3' -54.4 NC_001798.1 + 12350 0.69 0.87195
Target:  5'- gGGUCGAGGUGGCuGUgGGcGcGGuGGCu -3'
miRNA:   3'- -CCAGCUCUACCG-CAgCCuCcUCuUCG- -5'
5402 3' -54.4 NC_001798.1 + 58980 0.69 0.87195
Target:  5'- cGUCGGcGGccgGGCGaacgCGGGGGGGgcGCg -3'
miRNA:   3'- cCAGCU-CUa--CCGCa---GCCUCCUCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 101002 0.69 0.87195
Target:  5'- aGGggGAGGaaGGCG-CGGAGG-GggGCg -3'
miRNA:   3'- -CCagCUCUa-CCGCaGCCUCCuCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 10384 0.69 0.879133
Target:  5'- cGUCGGGGgucGGgGUCGGcacAGGGGcGGGCu -3'
miRNA:   3'- cCAGCUCUa--CCgCAGCC---UCCUC-UUCG- -5'
5402 3' -54.4 NC_001798.1 + 42603 0.69 0.879133
Target:  5'- aGGUCGAGGUacgcGGCcucGUCGuccGGGAGggGg -3'
miRNA:   3'- -CCAGCUCUA----CCG---CAGCc--UCCUCuuCg -5'
5402 3' -54.4 NC_001798.1 + 27554 0.69 0.886097
Target:  5'- gGGggaGGGgcGGCGcccgCGGGGGAGcGGCc -3'
miRNA:   3'- -CCag-CUCuaCCGCa---GCCUCCUCuUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.