Results 81 - 100 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
5402 | 3' | -54.4 | NC_001798.1 | + | 36438 | 0.68 | 0.911692 |
Target: 5'- gGGUCGGGGUcgcGGCGgggaaGGAaGGAaagaccccgGAAGCg -3' miRNA: 3'- -CCAGCUCUA---CCGCag---CCU-CCU---------CUUCG- -5' |
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5402 | 3' | -54.4 | NC_001798.1 | + | 36831 | 0.67 | 0.942603 |
Target: 5'- uGGUCGGcGUGGgGacCGGcugugugguggguGGGGGAGGCa -3' miRNA: 3'- -CCAGCUcUACCgCa-GCC-------------UCCUCUUCG- -5' |
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5402 | 3' | -54.4 | NC_001798.1 | + | 40484 | 0.67 | 0.944845 |
Target: 5'- aGUCG-GAcgagccugccugugcUGG-GcCGGGGGAGggGCa -3' miRNA: 3'- cCAGCuCU---------------ACCgCaGCCUCCUCuuCG- -5' |
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5402 | 3' | -54.4 | NC_001798.1 | + | 8875 | 0.67 | 0.947459 |
Target: 5'- cGGaCGcGGAagGGCGcuggCGGAGGgcGGAGGCg -3' miRNA: 3'- -CCaGC-UCUa-CCGCa---GCCUCC--UCUUCG- -5' |
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5402 | 3' | -54.4 | NC_001798.1 | + | 17964 | 0.67 | 0.947459 |
Target: 5'- -uUCGcAGGUccGGaCGUCGGGGGGGGcuGCg -3' miRNA: 3'- ccAGC-UCUA--CC-GCAGCCUCCUCUu-CG- -5' |
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5402 | 3' | -54.4 | NC_001798.1 | + | 94274 | 0.67 | 0.947459 |
Target: 5'- --aCGGGGUguucgccgGGCaGUCGGucGAGggGCg -3' miRNA: 3'- ccaGCUCUA--------CCG-CAGCCucCUCuuCG- -5' |
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5402 | 3' | -54.4 | NC_001798.1 | + | 41643 | 0.67 | 0.947459 |
Target: 5'- cGGUCGuGA-GGUGcUGGAGGG--AGCg -3' miRNA: 3'- -CCAGCuCUaCCGCaGCCUCCUcuUCG- -5' |
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5402 | 3' | -54.4 | NC_001798.1 | + | 22888 | 0.67 | 0.942603 |
Target: 5'- gGGUUcGGGUGGCacgguggGcCGGAGGAGAAc- -3' miRNA: 3'- -CCAGcUCUACCG-------CaGCCUCCUCUUcg -5' |
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5402 | 3' | -54.4 | NC_001798.1 | + | 4262 | 0.67 | 0.937464 |
Target: 5'- --aCGAGGaGGCGgaugcagacgaGGAGGAgGAGGCg -3' miRNA: 3'- ccaGCUCUaCCGCag---------CCUCCU-CUUCG- -5' |
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5402 | 3' | -54.4 | NC_001798.1 | + | 107400 | 0.67 | 0.928438 |
Target: 5'- ---gGAGGUGGCG--GGAGGAcuGggGCc -3' miRNA: 3'- ccagCUCUACCGCagCCUCCU--CuuCG- -5' |
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5402 | 3' | -54.4 | NC_001798.1 | + | 23873 | 0.67 | 0.933547 |
Target: 5'- cGGccUCuGGggGGCGcccgaggCGGAGGAGgcGCg -3' miRNA: 3'- -CC--AGcUCuaCCGCa------GCCUCCUCuuCG- -5' |
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5402 | 3' | -54.4 | NC_001798.1 | + | 145833 | 0.67 | 0.933547 |
Target: 5'- cGGUCGGGGUGGgaGUggUGGuGGGGGAc- -3' miRNA: 3'- -CCAGCUCUACCg-CA--GCCuCCUCUUcg -5' |
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5402 | 3' | -54.4 | NC_001798.1 | + | 30019 | 0.67 | 0.933547 |
Target: 5'- --cUGGGggGGCGagGGAggcagGGAGGAGCc -3' miRNA: 3'- ccaGCUCuaCCGCagCCU-----CCUCUUCG- -5' |
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5402 | 3' | -54.4 | NC_001798.1 | + | 129299 | 0.67 | 0.928438 |
Target: 5'- --cCGcGcgGGCG-CGGAGGAG-GGCg -3' miRNA: 3'- ccaGCuCuaCCGCaGCCUCCUCuUCG- -5' |
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5402 | 3' | -54.4 | NC_001798.1 | + | 135860 | 0.67 | 0.928438 |
Target: 5'- -uUCGGGA-GGCGUCuGGAcgcGGAGuacugGAGCg -3' miRNA: 3'- ccAGCUCUaCCGCAG-CCU---CCUC-----UUCG- -5' |
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5402 | 3' | -54.4 | NC_001798.1 | + | 39380 | 0.67 | 0.928438 |
Target: 5'- gGGUCGA--UGGUGUCGGcAGaGGgcGCc -3' miRNA: 3'- -CCAGCUcuACCGCAGCC-UCcUCuuCG- -5' |
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5402 | 3' | -54.4 | NC_001798.1 | + | 14981 | 0.66 | 0.955576 |
Target: 5'- --gCGGGAgcuugGGCGg-GGGGGcGAGGCg -3' miRNA: 3'- ccaGCUCUa----CCGCagCCUCCuCUUCG- -5' |
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5402 | 3' | -54.4 | NC_001798.1 | + | 15489 | 0.66 | 0.955192 |
Target: 5'- gGGUCGuGGgggcUGGUGUggUGGGGGgcguuuucgcugcGGAGGCg -3' miRNA: 3'- -CCAGCuCU----ACCGCA--GCCUCC-------------UCUUCG- -5' |
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5402 | 3' | -54.4 | NC_001798.1 | + | 49842 | 0.66 | 0.951632 |
Target: 5'- uGGUgCGaAGugcGGCGgCGGAGGAacccGggGCg -3' miRNA: 3'- -CCA-GC-UCua-CCGCaGCCUCCU----CuuCG- -5' |
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5402 | 3' | -54.4 | NC_001798.1 | + | 150570 | 0.66 | 0.955576 |
Target: 5'- gGGgcccgCGGGgcGGCGcggagacggCGGGGGAGAGucGCu -3' miRNA: 3'- -CCa----GCUCuaCCGCa--------GCCUCCUCUU--CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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