miRNA display CGI


Results 1 - 20 of 113 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5402 3' -54.4 NC_001798.1 + 153621 0.86 0.156282
Target:  5'- gGGUCgGAGGggcgucagGGgGUCGGAGGGGAGGCg -3'
miRNA:   3'- -CCAG-CUCUa-------CCgCAGCCUCCUCUUCG- -5'
5402 3' -54.4 NC_001798.1 + 31032 0.8 0.330373
Target:  5'- gGGUCGGGcgGGgGUCGGGcGGGGGucgGGCg -3'
miRNA:   3'- -CCAGCUCuaCCgCAGCCU-CCUCU---UCG- -5'
5402 3' -54.4 NC_001798.1 + 30966 0.8 0.330373
Target:  5'- gGGUCGGGcgGGgGUCGGGcGGGGGucgGGCg -3'
miRNA:   3'- -CCAGCUCuaCCgCAGCCU-CCUCU---UCG- -5'
5402 3' -54.4 NC_001798.1 + 30999 0.8 0.330373
Target:  5'- gGGUCGGGcgGGgGUCGGGcGGGGGucgGGCg -3'
miRNA:   3'- -CCAGCUCuaCCgCAGCCU-CCUCU---UCG- -5'
5402 3' -54.4 NC_001798.1 + 69660 0.79 0.369097
Target:  5'- uGGUgGAGGUGGgGagGGAGGAG-GGCg -3'
miRNA:   3'- -CCAgCUCUACCgCagCCUCCUCuUCG- -5'
5402 3' -54.4 NC_001798.1 + 63245 0.79 0.384605
Target:  5'- aGGcUGAGGggaaagcUGGCGUCGGGGGcGGggGCg -3'
miRNA:   3'- -CCaGCUCU-------ACCGCAGCCUCC-UCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 31791 0.77 0.455341
Target:  5'- gGGUCGGGAgggccgGGCG-CGGAGG-GAGGa -3'
miRNA:   3'- -CCAGCUCUa-----CCGCaGCCUCCuCUUCg -5'
5402 3' -54.4 NC_001798.1 + 153564 0.77 0.483272
Target:  5'- gGGUCG-GAggGGCGUCaGGGggucGGAGggGCg -3'
miRNA:   3'- -CCAGCuCUa-CCGCAG-CCU----CCUCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 153526 0.77 0.483272
Target:  5'- gGGUCG-GAggGGCGUCaGGGggucGGAGggGCg -3'
miRNA:   3'- -CCAGCuCUa-CCGCAG-CCU----CCUCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 150094 0.75 0.56133
Target:  5'- aGGggCGAGcgcggGGCGgCGGAGGAaGAGGCg -3'
miRNA:   3'- -CCa-GCUCua---CCGCaGCCUCCU-CUUCG- -5'
5402 3' -54.4 NC_001798.1 + 26930 0.75 0.569355
Target:  5'- gGGUCGGGcgGGCGgggucgggcgggCGGGGGucGGGCg -3'
miRNA:   3'- -CCAGCUCuaCCGCa-----------GCCUCCucUUCG- -5'
5402 3' -54.4 NC_001798.1 + 26810 0.75 0.577407
Target:  5'- gGGUCGGGcgGGCGggggucgggcgggCGGGGGucGGGCg -3'
miRNA:   3'- -CCAGCUCuaCCGCa------------GCCUCCucUUCG- -5'
5402 3' -54.4 NC_001798.1 + 26974 0.75 0.577407
Target:  5'- gGGUCGGGcgGGCGggggucgggcgggCGGGGGucGGGCg -3'
miRNA:   3'- -CCAGCUCuaCCGCa------------GCCUCCucUUCG- -5'
5402 3' -54.4 NC_001798.1 + 26855 0.75 0.577407
Target:  5'- gGGUCGGGcgGGCGggggucgggcgggCGGGGGucGGGCg -3'
miRNA:   3'- -CCAGCUCuaCCGCa------------GCCUCCucUUCG- -5'
5402 3' -54.4 NC_001798.1 + 38342 0.75 0.591557
Target:  5'- aGGuUCGAGAggGGCGUCGuugucauguugcGAGGGGggGg -3'
miRNA:   3'- -CC-AGCUCUa-CCGCAGC------------CUCCUCuuCg -5'
5402 3' -54.4 NC_001798.1 + 55462 0.75 0.591557
Target:  5'- uGGUCGguGGGUGGgGUgGGGGaagaaGAGAGGCg -3'
miRNA:   3'- -CCAGC--UCUACCgCAgCCUC-----CUCUUCG- -5'
5402 3' -54.4 NC_001798.1 + 111643 0.74 0.611865
Target:  5'- cGUCGGG--GGCGcUCGGcGGGGggGCg -3'
miRNA:   3'- cCAGCUCuaCCGC-AGCCuCCUCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 9720 0.74 0.642422
Target:  5'- gGGcUCGGGcUGGCGcUGGGGGAGguGCu -3'
miRNA:   3'- -CC-AGCUCuACCGCaGCCUCCUCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 10286 0.73 0.650567
Target:  5'- cGUCGGGggGGCGacggggggacgaCGGGGGGGggGUu -3'
miRNA:   3'- cCAGCUCuaCCGCa-----------GCCUCCUCuuCG- -5'
5402 3' -54.4 NC_001798.1 + 57517 0.73 0.693075
Target:  5'- gGGUUGGGggGGCGUgGGuguGGuucgGGggGCg -3'
miRNA:   3'- -CCAGCUCuaCCGCAgCCu--CC----UCuuCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.