Results 21 - 40 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5402 | 3' | -54.4 | NC_001798.1 | + | 149840 | 0.72 | 0.70309 |
Target: 5'- aGGagGAGGaGGCGgaGGAGGAgGAGGCg -3' miRNA: 3'- -CCagCUCUaCCGCagCCUCCU-CUUCG- -5' |
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5402 | 3' | -54.4 | NC_001798.1 | + | 149900 | 0.72 | 0.70309 |
Target: 5'- aGGagGAGGaGGCGgaGGAGGAgGAGGCg -3' miRNA: 3'- -CCagCUCUaCCGCagCCUCCU-CUUCG- -5' |
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5402 | 3' | -54.4 | NC_001798.1 | + | 149870 | 0.72 | 0.70309 |
Target: 5'- aGGagGAGGaGGCGgaGGAGGAgGAGGCg -3' miRNA: 3'- -CCagCUCUaCCGCagCCUCCU-CUUCG- -5' |
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5402 | 3' | -54.4 | NC_001798.1 | + | 4393 | 0.72 | 0.70309 |
Target: 5'- uGGUgGuGGUGGUGUCGGcggggcgccGGGGGucGCg -3' miRNA: 3'- -CCAgCuCUACCGCAGCC---------UCCUCuuCG- -5' |
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5402 | 3' | -54.4 | NC_001798.1 | + | 27019 | 0.72 | 0.722932 |
Target: 5'- gGGUCGGGcgGGCGggggUCGGGcGGGcGGCa -3' miRNA: 3'- -CCAGCUCuaCCGC----AGCCUcCUCuUCG- -5' |
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5402 | 3' | -54.4 | NC_001798.1 | + | 5273 | 0.72 | 0.722932 |
Target: 5'- ---gGAGGaGGaCG-CGGAGGAGGAGCg -3' miRNA: 3'- ccagCUCUaCC-GCaGCCUCCUCUUCG- -5' |
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5402 | 3' | -54.4 | NC_001798.1 | + | 35799 | 0.72 | 0.742464 |
Target: 5'- -uUCGucg-GGCGgCGGGGGGGggGCg -3' miRNA: 3'- ccAGCucuaCCGCaGCCUCCUCuuCG- -5' |
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5402 | 3' | -54.4 | NC_001798.1 | + | 122214 | 0.72 | 0.742464 |
Target: 5'- uGGUCGAG-UGGCuGgaccgCGGGuGGGAAGCu -3' miRNA: 3'- -CCAGCUCuACCG-Ca----GCCUcCUCUUCG- -5' |
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5402 | 3' | -54.4 | NC_001798.1 | + | 27179 | 0.72 | 0.742464 |
Target: 5'- -cUCGGGGccgcgGGCG-CGGGGGgAGggGCg -3' miRNA: 3'- ccAGCUCUa----CCGCaGCCUCC-UCuuCG- -5' |
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5402 | 3' | -54.4 | NC_001798.1 | + | 59841 | 0.72 | 0.750174 |
Target: 5'- cGGUCGcccgcguccGGC-UCGGAGGAGGAGUc -3' miRNA: 3'- -CCAGCucua-----CCGcAGCCUCCUCUUCG- -5' |
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5402 | 3' | -54.4 | NC_001798.1 | + | 27256 | 0.72 | 0.752092 |
Target: 5'- cGGccgCGGGAccgcagccccgUGGCGcgCGGGGGGGAGGg -3' miRNA: 3'- -CCa--GCUCU-----------ACCGCa-GCCUCCUCUUCg -5' |
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5402 | 3' | -54.4 | NC_001798.1 | + | 2559 | 0.71 | 0.761614 |
Target: 5'- --gCGGGAggGGCGgccgCGGGGcGGGggGCg -3' miRNA: 3'- ccaGCUCUa-CCGCa---GCCUC-CUCuuCG- -5' |
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5402 | 3' | -54.4 | NC_001798.1 | + | 48535 | 0.71 | 0.761614 |
Target: 5'- aGGggCGGGAggGGCGggaGGggcGGGAGggGCg -3' miRNA: 3'- -CCa-GCUCUa-CCGCag-CC---UCCUCuuCG- -5' |
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5402 | 3' | -54.4 | NC_001798.1 | + | 48571 | 0.71 | 0.761614 |
Target: 5'- aGGggCGGGAggGGCGggaGGggcGGGAGggGCg -3' miRNA: 3'- -CCa-GCUCUa-CCGCag-CC---UCCUCuuCG- -5' |
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5402 | 3' | -54.4 | NC_001798.1 | + | 48607 | 0.71 | 0.761614 |
Target: 5'- aGGggCGGGAggGGCGggaGGggcGGGAGggGCg -3' miRNA: 3'- -CCa-GCUCUa-CCGCag-CC---UCCUCuuCG- -5' |
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5402 | 3' | -54.4 | NC_001798.1 | + | 51087 | 0.71 | 0.771023 |
Target: 5'- aGGUCGAGGc--CG-CGGGGGAGAuGGCg -3' miRNA: 3'- -CCAGCUCUaccGCaGCCUCCUCU-UCG- -5' |
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5402 | 3' | -54.4 | NC_001798.1 | + | 64346 | 0.71 | 0.771023 |
Target: 5'- uGGaCGAGAaGGCGgaccagggUGGAGGcgGGGAGCg -3' miRNA: 3'- -CCaGCUCUaCCGCa-------GCCUCC--UCUUCG- -5' |
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5402 | 3' | -54.4 | NC_001798.1 | + | 90804 | 0.71 | 0.780309 |
Target: 5'- cGG-CGAcgcGAUGGCuUCGGGGGucagacccAGAAGCg -3' miRNA: 3'- -CCaGCU---CUACCGcAGCCUCC--------UCUUCG- -5' |
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5402 | 3' | -54.4 | NC_001798.1 | + | 101853 | 0.71 | 0.789464 |
Target: 5'- gGGUCccGgcGGCGgCGGAGGGGGgugGGCg -3' miRNA: 3'- -CCAGcuCuaCCGCaGCCUCCUCU---UCG- -5' |
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5402 | 3' | -54.4 | NC_001798.1 | + | 15324 | 0.71 | 0.798478 |
Target: 5'- cGGcCGAGGgccccGGCGcgguagCGGGGGGcGAGGCg -3' miRNA: 3'- -CCaGCUCUa----CCGCa-----GCCUCCU-CUUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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